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Deeplasmid: deep learning accurately separates plasmids from bacterial chromosomes
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An Integrated Dataset to Understand Ecosystem Interaction
… processes for the first time. By collecting data from 27 different poplar ( Populus trichocarpa ) trees, as … were provided by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … (Berkeley Lab). All of this information — 318 metagenomes, 98 plant transcriptomes and 314 metabolomic …
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Picking Up Threads of Cotton Genomics
Analysis reveals cotton genome stability across global lineages . Come harvest time, … Berkeley National Laboratory (Berkeley Lab) has now sequenced and assembled the genomes of these five cotton … Science “The results described in this  Nature Genetics publication will facilitate deeper understanding of cotton …
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Bioenergy sorghum’s deep roots: A key to sustainable biomass production on annual cropland
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Drought shifts sorghum root metabolite and microbiome profiles and enriches for pipecolic acid
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… year, the JGI team reported the first closed and finished genome derived from an uncultured bacterial single cell – a symbiont of the green … cell (seen here in a glass capillary), researchers sequenced and assembled the first complete genome of an …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… a method that allows researchers to quickly modify diverse bacterial genomes. In 2019, the JGI’s Yasuo Yoshikuni and his team  … relatives with the BGCs, JGI scientists could relieve BGCs from their former genetic repression, enabling scientists to …
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The “Most Wanted” Taxa from the Human Microbiome for Whole Genome Sequencing
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Draft Genome Sequences of Gammaproteobacterial Methanotrophs Isolated from Marine Ecosystems
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… clonally propagated from cuttings represent a diverse collection sourced from half of the United States. As  … and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … diversity within this set of plants, each with a fully-sequenced genome, and these gardens allow researchers to …
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Genome Calligrapher: A Web Tool for Refactoring Bacterial Genome Sequences for de Novo DNA Synthesis
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… scientists are now getting more complete genomic results from single cells. The Science Studying the  genomes of microorganisms is incredibly useful for … with the JGI. Working together, they found most bacterial genomes from water and soil communities were at …
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