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Genome Institute dates back to 1997, when he was working for the Stanford Human Genome Center, now the HudsonAlpha … de novo plant assembly and the post-genome computational analysis at HudsonAlpha. … Jeremy Schmutz is the Plant … Award … Plant Science Program … Education … Selected Publications … Awards and Honors …

… he served as a Research Molecular Biologist at the USDA for 12 years where he was a driving force behind the … mutant collections, transformation technology, epigenetic analysis techniques) and utilizing these resources to … Visiting Fellowship Australia … Education … Selected Publications … Awards and Service …

… datasets in JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) data suite—which includes  IMG/VR (for Virus)—for the virophage marker gene MCP, they were able … including over 28,000 unique MCP sequences.  Further analysis led to the identification of 328 “high quality” …

… challenges. Sorghum stands out as a candidate feedstock for biofuels thanks to its drought and flood hardiness. Even … reference genome for Sorghum bicolor . Since then, 2,993 publications, 107 patent applications, and 53 patents have … sorghum genomes. Deep sequencing and genetic linkage analysis improve the genome’s accuracy, and increase its …

Neha’s key role is to design, benchmark, and apply bioinformatics software to enable analysis and interpretation of genomic and metagenomic data … through implementation of advanced analysis pipelines and tools as well as development and implementation of …

… attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of … question, despite of their well-designed sampling and analysis of their data at the time. Following the … genome and transcriptome data were generated, bioinformatic tools for binning metagenome data involved with mainly …

The  National Ecological Observatory Network (NEON) is a network … Through the  “Facilities Integrating Collaborations for User Science” (FICUS) call between the JGI and the  … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to …

… nearly 100,000 single root cells and combining the information with previously published datasets. The work was  … with resulting reports and a  perspective article . Publication: Shahan R et al.  A single cell Arabidopsis root … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to …

… relevant to living on a changing planet. Transcript for Audio   ALISON:  Hey! I’m Alison Takemura at the US … Community Science Project proposal with JGI, in which she’s studying a special kind of plant metabolism. This … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to …

… and the Environmental Molecular Sciences Laboratory (EMSL) for “Empowering Automated Laboratories: Integrating … Seattle, Washington.   Topics will include:  environmental microbiomes biodesign and synthetic biology AI/ML-enabled … systems using advanced experimental and informatic tools at no cost. The JGI and EMSL are supported by the …