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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the … the JGI Plant Gene Atlas in  Nucleic Acids Research . The project spans 15 years and involves more than 17 research …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… (CSP) call of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … through the  CSP New Investigator call . It is the first project to have successfully evolved into a full-scale … which species of mycorrhizal fungi are important for poplar plant health, in part to learn how these species can …
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A Cost-Efficient Way to Convert Yeast into a Cell Factory for Hydroxyapatite
… Innovative technology from this biomanufacturing … of Energy national user facilities – the DOE Joint Genome Institute and the Molecular Foundry – both located at … The collaboration between the JGI and the Foundry on this project highlights an  ongoing partnership that combines the …
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Single Cell Research Group
… Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of uncultivated taxa of interest. One such effort is targeted at environmental cells … in the strongly biased representation of sequenced genomes in the public domain, the bulk of which belong to …
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Annotation survey and life-cycle transcriptomics of transcription factors in rust fungi (Pucciniales) identify a possible role for cold shock proteins in dormancy exit
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Building Sphagnum Genomic Resources
… Sphagnome data would enable researchers’ insights on their potential carbon cycling impact.   The … (Spruce and Peatland Responses Under Changing Environments) project, assessing how northern peatland ecosystems respond … researchers are aiming to have two high quality reference genomes for peat-forming species that occupy different …
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Help from Citrus’ Bitter, Hardier Cousin
… The chromosome-scale genome sequence of trifoliate orange yields clues to disease-resistance that could prove fruitful for saving Citrus from greening disease. You’ve probably never … leaves, a team of researchers sequenced  P. trifoliata ’s genome. Scientists at the US Department of Energy (DOE) …
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THE Bioenergy Tree
… The US Department of Energy’s favorite tree is poplar. They’re the fastest growing trees in the Northern Hemisphere, making them … remarkable genetic secrets that bring us closer to making poplar an economical and sustainable source of energy and …
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From Competition to Cooperation
… Tracking evolution of symbiotic lifestyles across multiple fungal … lineages. The Science By comparing 135 fungal sequenced genomes, researchers were able to carry out a broader … lineages. To learn why, researchers analyzed 135 fungal genomes representing major fungal families, including those …
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Micro-Scale Applications Group
… the genetic makeup of natural microbial communities using a variety of cutting-edge approaches.  Our group also seeks out new … technology in order to enhance the quality of single-cell genomes and directly link functional information with … uniquely offers the first quantitative Stable Isotope Probing (SIP) Metagenomics pipeline that utilizes internal …
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Uncovering Novel Genomes from Earth’s Microbiomes
… metabolites for multiple applications. Despite advances in sequencing technologies and computational methods in the past decade, researchers have uncovered genomes for just a small fraction of Earth’s microbial … hope JGI and other institutions continue to do this kind of projects.” The work also used resources of the  National …
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High Throughput Phosphoglycolate Phosphatase Activity Assay Using Crude Leaf Extract and Recombinant Enzyme to Determine Kinetic Parameters Km and Vmax Using a Microplate Reader
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