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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
The JGI Engagement Webinar held November 5, 2020 (watch the  … Metabolite Annotation and Gene Integration . ACS Chem Biol. 2019 Apr 19;14(4):704-714. doi: 10.1021/acschembio.8b01107. Epub 2019 Apr 4. Q:  Any advice on normalizing metabolomic data …
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Conserved unique peptide patterns (CUPP) online platform 2.0: implementation of +1000 JGI fungal genomes.
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JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom
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Tanja Woyke
Karls University Tübingen (Germany), Dr. Woyke pursued her postdoctoral research at the DOE Joint Genome Institute in … of User Program position in 2021. In addition to her JGI appointment, she also holds an Adjunct Scientist … Member for ISME J (Senior Editor 2016-2021), Peer J (2015-2019), Scientific Data (2017-2019). Reviewer for major …
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FICUS-NERSC/KBASE
… expand upon highly successful past collaborations, the DOE JGI, NERSC and KBase issued a call for proposals in … as part of the FICUS initiative. Proposals submitted to the JGI-NERSC-KBase call do not use the Letter of Intent; rather … review cycle. All proposals undergo technical review by JGI staff as well as staff at the other participating …
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Igor Grigoriev
… the DOE Joint Genome Institute in 2003, following his postdoctoral training at UC Berkeley and work in the … genomes, from protists to plants. In 2009, he launched the JGI Fungal Genomics program which resulted in over 2500 … of natural products. Proc Natl Acad Sci U S A. 118(18):e2019855118. Miyauchi et al (2020) Large-scale genome …
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Katherine Louie
Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 became Platform Lead where she manages metabolomics … Proc Natl Acad Sci U S A. 2021;118. doi:10.1073/pnas.2019855118 2. Murphy KM, Edwards J, Louie KB, Bowen BP, …
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Tanja Woyke Elected to American Academy of Microbiology
Congratulations to the JGI’s Tanja Woyke , who has been elected to the American … at the JGI’s 14th Annual Genomics of Energy & Environment Meeting, as well as Mircea Podar of Oak Ridge National Laboratory, who spoke at the 2019 New Lineages of Life (NeLLi) Meeting organized by the …
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Emiley Eloe-Fadrosh
Dr. Eloe-Fadrosh joined the JGI in 2014 to pursue her research interests in microbial … of the Marine Microbiology Initiative. She conducted her postdoctoral training in human microbiome research at the … science. Rev. Microbiol. 18:313-314. Roux S, et al. 2019. Cryptic inoviruses are pervasive in bacteria and …
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John Vogel
Dr. Vogel joined JGI in 2014 to establish a plant functional genomics … improved varieties for biomass production. He did his postdoctoral studies at the Carnegie Institution for Science … Varoquaux, et. al.N. 2019 Transcriptomic analysis of field-droughted sorghum from …
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Scaling Up Existing Skill Sets
Over the course of the summer, the JGI-UC Merced Genomics Internship paired six UC Merced … to functional genomics. Hear from five of the Summer 2019 interns, who briefly shared their experiences below. … motivated me to think outside of simply looking for jobs/postdocs in industry or academia. It was also a great …
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2024 Progress Report
… (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase … users to leverage biological and biochemical functions to meet climate and energy goals, improve food security and … have organized, chaired sessions, presented and attended meetings around the world to showcase the JGI’s science and …
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