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Data Ecosystem
… data on scales ranging from single genes and individual genomes to metagenomes to systems-level modeling and understanding. JGI and …
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Help from Citrus’ Bitter, Hardier Cousin
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The IMG/M data management and analysis system v.6.0: new tools and advanced capabilities
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How to Target a Microbial Needle within a Community Haystack
Marine Microbiology has developed, tested and deployed a pipeline to first target cells from communities of … and then efficiently retrieve and characterize their genomes. The Impact Despite great strides in generating … the HCR-FISH+FACS targeted pipeline on North Sea metagenomes as a proof of principle, the team used a …
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A One-Stop Shop for Analyzing Algal Genomes
… genes of more than 100 algae. The Science Interested in the genomes of algae? You now have one place where you can … and enthusiasts to look deep into more than 100 algal genomes, compare them, and visualize supporting experimental … including the Integrated Microbial Genomes and Microbiomes (IMG/M) system for microbial and metagenome datasets, …
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Exploring Proteomes of Robust Yarrowia lipolytica Isolates Cultivated in Biomass Hydrolysate Reveals Key Processes Impacting Mixed Sugar Utilization, Lipid Accumulation, and Degradation
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OpenMSI Arrayed Analysis Toolkit: Analyzing Spatially Defined Samples Using Mass Spectrometry Imaging
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Arabidopsis Root Microbiome Microfluidic (ARMM) Device for Imaging Bacterial Colonization and Morphogenesis of Arabidopsis Roots
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
Beginning in the early 2000s , these environmental metagenomes began to offer a window into viral existence. Along … access to these viral genomes. The new database was called IMG/VR. It featured samples from different ecosystems all … genomes, JGI researcher Antonio Camargo developed a new pipeline for identifying viruses across many thousands of …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… in the summer of 2014 has grown to a total of 75 with the inclusion of the 2023 cohort. Each of them has brought …
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Complete Genome Sequence of Methanolinea tarda NOBI-1T, a Hydrogenotrophic Methanogen Isolated from Methanogenic Digester Sludge
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Doubling Down on Known Protein Families
… through the publicly available  Integrated Microbial Genomes & Microbiomes (IMG/M) database, they successfully crafted the Novel … has been no real analysis of protein families from metagenomes per se.”  Recently, other research teams have …
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