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Community Science Program
Areas . Through this program, the DOE aims to advance genome science-based scientific research from a broad range …
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Metabolomics
… this identification, metabolomics enables functional genome annotation, improves understanding of the role small …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… of the flagship internship program between the DOE Joint Genome Institute (JGI) and University of California (UC), … UC Merced Senior Assistant Dean and CFO of the School of Natural Sciences Ernie Costello beamed as he spoke of what … working with Elizabeth Dumont , Dean of the School of Natural Sciences, to make sure that they provide the …
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Insights of biomass recalcitrance in natural Populus trichocarpa variants for biomass conversion
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The Power of One, Amplified
… mobile genetic elements that were missed within paired metagenome assembled genomes (MAGs), and that dominant … of single cell sequencing to assess the variation within natural microbial populations. Each of the three sequencing … work was also sponsored by NSF grants DEB-1441717, OCE-1335810, and OIA-1826734 to RS. …
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An Integrated Dataset to Understand Ecosystem Interaction
… samples studied by researchers came from two environments: natural forests and plantations managed through human … were provided by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … contract DE-AC05-00OR22725. The work ( https://doi.org/10.46936/10.25585/60000017 ) conducted by the U.S. …
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The Case for Conservation
… moss Ceratodon purpureus is a short plant with a complex genome . Now, high-quality reference genome sequences of the … and at HudsonAlpha. As the team discussed in a JGI podcast episode about the work, the effort to fully sequence the … of satisfaction. … This work was supported by NSF DEB-1541005 and start-up funds from UF to S.F.M.; microMORPH …
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Gut Fungi: Unexpected Source of Novel Chemicals
… don’t have the energy to make complex compounds called natural products . Yet, combing through the genomes of four anaerobic fungal species has revealed, for … Computing from the CNSI, MRL: an NSF MRSEC (DMR-1121053) and NSF CNS-0960316. …
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JGI on the 2020 Highly Cited Researchers List
… a consortium that  released a very high quality reference genome sequence of green millet ( Setaria viridis ) in  … Tringe , and Tanja Woyke  were part of a “big data” mining effort reported in  Nature Biotechnology that led to … a JGI-led team that  applied machine learning to classify 101 representative genomes of Dothideomycetes, the largest …
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A Collaboration to Improve Plant Genome Annotations Across Species
To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the HudsonAlpha … Institute for Biotechnology, which specializes in genome improvement for plants. As part of that partnership, … Avinash: In the initial planning phase, there were about 10 groups that came together to standardize the experimental …
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Comparative transcriptomics as a guide to natural product discovery and biosynthetic gene cluster functionality
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Catabolic repression in early-diverging anaerobic fungi is partially mediated by natural antisense transcripts
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