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Axel Visel
Dr. Visel joined the DOE Joint Genome Institute in 2010. As the Deputy for Science … and implementation of strategic initiatives at the JGI. Dr. Visel received his Ph.D. in 2004 from the Max … I, Shoukry M, Afzal V, Rubenstein JL, Rubin EM, Pennacchio LA*, Visel A * (2013). Rapid and Pervasive …
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Single Cell Research Group
… in the strongly biased representation of sequenced genomes in the public domain, the bulk of which belong to … relationships and to provide valuable reference genomes in under-populated areas of the tree of life, as … G., Luo S., Clark D.S., Chen F., Zhang T., Mackie R.I., Pennacchio L.A., Tringe S.G., Visel A., Woyke T ., Wang Z. & …
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Metabolomics
Metabolomics strengthens -omics technologies at the JGI by identifying the actual molecules present in an … this identification, metabolomics enables functional genome annotation, improves understanding of the role small … leads to the discovery of new molecules and pathways. The JGI Metabolomics Platform delivers rich metabolite profiles …
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Alabama Agricultural & Mechanical University Internship Program
Alabama Agricultural & Mechanical University and the Joint Genome Institute. AAMU students spent two months in Berkeley, California honing their … success of the UC Merced internship program, they left the JGI more confident and ready to tackle real-world scientific …
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User Support Analysis Group
… computational analysis for new technology development and JGI user science projects. We perform analysis for diverse experiment types, with main focus areas being genome variation, transcriptomics and epigenomics. Our work …
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RETRACTED ARTICLE: Evolution of substrate-specific gene expression and RNA editing in brown rot wood-decaying fungi
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Sequencing and functional validation of the JGI Brachypodium distachyon T‐DNA collection
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Dan Rokhsar
Dr. Rokhsar joined the DOE Joint Genome Institute in 2000 as the founding Associate Director … over fifty plant and animal genomes. He currently leads the JGI’s Computational Genomics group, and is past lead of the Eukaryotic Genome Program (2010-2019), and JGI Chief Informatics Officer (2013-2016). Dr. Rokhsar …
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Nigel Mouncey
Dr. Mouncey joined the DOE Joint Genome Institute in 2017 as the fourth Director in its … and today, focuses on continuing to build and position JGI as a leading integrative genome science user facility. … 76:4369-76. Mouncey NJ & Kaplan S. (1998). Redox-dependent gene regulation in Rhodobacter sphaeroides 2.4.1(T): …
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Conserved unique peptide patterns (CUPP) online platform 2.0: implementation of +1000 JGI fungal genomes.
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User Executive Committee Charter
The JGI User Executive Committee (UEC) represents the JGI user community and is responsible for providing input … and each user can vote for as many candidates as there are openings. Meetings The UEC will meet in person once per year …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
UC Merced students have contributed to the research of 13 JGI scientists since the program’s inception. In 2014, JGI’s … presentations on their research findings. Click here to watch   a video of the celebration. Several alumni of the …
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