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JGI@25: A Single Cell, Myriad Microbial Discoveries
… a novel technique to access high-quality genomic information using minute quantities of DNA derived from … and offered a way for researchers to study the planet’s microbial diversity, much of which remains unknown and … the JGI and Bigelow Lab led to the identification of key microbial culprits in carbon fixation in the dark ocean. …
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JGI Hosts GPU Hackathon in May
… JGI hackathon is particularly focused on developing bioinformatics applications instead of on simulation codes. “JGI is … a strong reputation in the community,” said JGI Chief Informatics Officer Kjiersten Fagnan of the upcoming event. “The … some experience with OpenACC or CUDA – links to training materials will be sent out. The main benefit is professional …
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Highly diverse and unknown viruses may enhance Antarctic endoliths’ adaptability
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Draft genome sequence of Dethiosulfovibrio salsuginis DSM 21565T an anaerobic, slightly halophilic bacterium isolated from a Colombian saline spring
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Nontargeted virus sequence discovery pipeline and virus clustering for metagenomic data
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Nikos Kyrpides
… the development of the comparative analysis platforms for microbial genomes and metagenomes (IMG). He became the Metagenomics Program head in 2010 and has the combined Microbial Genomes and Metagenomes Program since 2011. Prior … led the development of the genome analysis and Bioinformatics core at Integrated Genomics Inc. in Chicago, IL. He …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… Analysis reveals the microbial community involved in a bioremediation effort. The … and analysis, the researchers identified other bacteria and microbial processes that support PCE biodegradation. The results demonstrate that it takes a (microbial) community to clean up a Superfund site. The …
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Changes to virus taxonomy, the international code of virus classification and nomenclature, and the ICTV statutes ratified by the International Committee on Taxonomy of Viruses (2025)
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Fungal & Algal Program
… practical applications, including sustainable biofuels, biomaterials, natural products, and environmental solutions, … be applied in biorefineries, production of biochemicals, biomaterials, and sustainable energy solutions. Algae, too, … Program aims to streamline genome analysis workflows for microbial eukaryotes, build fungal and algal pangenomes, and …
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Virus species names have been standardized; virus names remain unchanged
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Natural Prodcast
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JGI Early Career Researchers Featured in mSystems Special Issue
… sample beyond the tried-and-true method of traditional shotgun metagenomics. One approach uses … sequence reads to link mobile elements such as plasmids to microbial host cells. In a separate article, research … A comprehensive map of viruses including host information, Roux says, would be the foundation upon which …
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