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Data Ecosystem
… specifically optimized for high-performance computing environments. … KBase is a critical partner in enabling systems … analyses, such as metabolic modeling, that go well beyond genome annotation and analysis. The JGI and KBase seek … Scientific Computing Center … DOE System Biology Knowledgebase … National Microbiome Data Collaborative …
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JGI announces 2024 Functional Genomics awardees
… year, the JGI accepts proposals for state-of-the-art functional genomics research from reseachers who translate genomic … Through our CSP Functional Genomics call , we look for projects that will leverage the JGI’s DNA synthesis and … in support of advancing the bioeconomy.  This year’s project goals range from improving crop productivity for …
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JGI@25: Building a Better Bean
In honor of the JGI's 25th anniversary in 2022, we have … number of notable achievements that showcase our collaborations and capabilities to enable great science that will help …   “Technology was actually quite a bit different than it is today,” Schmutz said. “…It was incredibly expensive and …
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Doubling Down on Known Protein Families
Using a novel computational approach, researchers confirm microbial diversity is wilder than ever. Imagine … Georgios Pavlopoulos, now a research director at the Biomedical Sciences Research Center  Alexander Fleming. “This …
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The Megadata of Lake Mendota – Part 3: Boating Out to David Buoy
This is the third and final episode of our series on a giant metagenome assembly from Wisconsin’s Lake … the specialized software and supercomputers behind this project. But every part of this project depends on lakewater samples — so this episode is a …
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Filling in the Plant Tree of Life
… plants and how they adapt to their ever-changing environments better? We could unlock new innovations to drive more productive food, medicine, and bioenergy … are from narrow swaths of the plant tree of life. One project aims to change that. …
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2025 NeLLi Symposium
Registration and Agenda Coming Soon!  Hosted by the DOE Joint Genome Institute, the … Lead Tanja Woyke , Microbial Program Gitta Szabo , User Project Coordination Rekha Seshadri, Functional Annotation …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… deep subsurface ecosystem. The Science Altiarchaea are carbon-fixing microbes and targets of multiple viruses in … (Nachwuchs-gruppe “Dr. Alexander Probst”), and the NOVAC project of the German Science Foundation (grant number DFG … the Census of Deep Life Sequencing call 2018, phase 14 project “Development of novel archaeal viruses and the …
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Effects of Polar Light Cycle on Microbial Food Web
Populations of Antarctic lake microbial communities change with the seasons. The Science Light-harvesting bacteria (phototrophs) in … (DP150100244) and the Australian Antarctic Science program (project 4031). The work conducted by the US Department of …
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JGI Welcomes New UEC Members
… (UEC) represents the JGI user community and is responsible for providing input and advice on JGI policies and practices that affect users and their … as well as proposal review procedures and the organization of the JGI Annual Meeting. Any investigator who has been …
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The Expanding Universe of Methane Metabolisms in Archaea
Methane is a greenhouse gas 20 times more potent than carbon dioxide. Billions of years ago, methane-producing archaea likely played a … and how it gave rise to the different pathways we see today is not only important to understand early life, but …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… regulate Earth’s climate. Most methane is produced in environments without oxygen through a process called … therefore play a critical role in the global carbon cycle, and are of significant interest for their potential contributions to a sustainable bioeconomy, including, …
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