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A Model System for Perennial Grasses
… Panicum hallii genomes offer insights to drought tolerance. The Science … complete genomes from varieties that diverged over a million years ago. The hallii variety thrives in desert … yields in other grasses. The team conducted several large-scale field experiments and analysis to find relationships …
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Frederik Schulz
… Dr. Frederik Schulz joined the DOE Joint Genome Institute in 2016 and is leading the New Lineages of Life Group. His research is focussed on the discovery of novel bacterial, archaeal and eukaryotic … to the JGI user community and supports various user projects in the Microbial Program. In an LDRD-funded …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… at the University of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology (HudsonAlpha), and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … two copies of the genome , which can have pronounced ecological and evolutionary consequences. A previous study …
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Mining Metagenomes for Cas Proteins
… proteins discovered from JGI’s IMG/M database and biochemically characterized at UC Berkeley and the Innovative … possible by mining the datasets in the Integrated Microbial Genomes and Microbiomes (IMG/M) suite of tools managed by … to accurately edit genomes (that is, repair gene mutations, and either delete or add genes in a precise fashion) …
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Gene Expression: From On-Off Switch to Dial
… Fine-tuning metabolic gene expression helps identify variants in yeast genes. The Science … researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … glycerol and galactose. Although they are historically well-studied, Alper’s team discovered new gene targets …
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Gut Fungi: Unexpected Source of Novel Chemicals
… poop make surprisingly complex compounds — an energetically expensive feat thought to be too costly for them. The … and help them digest their last leafy meal. In their evolutionary history, these fungi branched off early from aerobic … called natural products . Yet, combing through the genomes of four anaerobic fungal species has revealed, for …
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How Filamentous Fungi Sense Food
… of California, Berkeley used a multi-omics approach to reconstruct and model gene regulatory pathways used by the … researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … proposal akin to the Encyclopedia of DNA Elements (ENCODE) project, which is aimed at determining the activity, …
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A Complex Confection Decoded: Sugarcane Reference Genome
… was the last major crop without a reference quality genome and now crop researchers can work toward advancing sugarcane biotechnology. The Science Considered the world’s most harvested crop by tonnage, … Additionally, insights from the genome could help scale sustainable sugarcane conversion technologies for  …
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Igor Grigoriev
… at the JGI, a Senior Scientist at Lawrence Berkeley National Laboratory, and an Adjunct Professor of Plant and … of California, Berkeley. He contributed to the Human Genome Project and led annotation and analysis of diverse … at the JGI. Click to learn more about the program's areas of focus, major initiatives and more.  …
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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
… Register here Book your stay at the conference venue This inaugural event will bring together … studies.  This conference is inspired by the vision of standardized fabricated ecosystems (EcoFABs) designed for … applying these engineered ecosystems across various biological contexts. The program fosters intimate, dynamic …
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Adam Reisselman on being a 2016 DOE Computational Science Graduate Fellow
… The Department of Energy's Computational Science Graduate Fellowship (DOE CSGF) program was developed to meet the Nation's growing need for science and technology professionals …
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A Grass Model to Help Improve Giant Miscanthus
… of polyploidy and perenniality. The Science A reference genome sequence and genomic toolkit for the perennial grass … chromosomes of Miscanthus arose by ancient hybridization (polyploidy) and insights into the dynamics of gene … Europe and Asia. CABBI partners include the University of California, Berkeley and the HudsonAlpha Center for …
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