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JGI@25: Strengthening Soybean
… In honor of the JGI's 25th anniversary in 2022, we have … is critical to energy independence in the U.S. Not only does it pair with maize, the dominant source of bioethanol, … source of both protein and oil was also the largest plant project completed by the JGI. It has since been cited more …
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Scaling Up Existing Skill Sets
… opportunities in fields ranging from plant-microbe interactions to functional genomics. Hear from five of the Summer … anyone in the Institute to get feedback and insights on the project and everyone’s willingness to guide or mentor me … one that incorporates big data. A large part of my project this summer was utilizing a high performance cluster …
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Jeremy Schmutz
… working for the Stanford Human Genome Center, now the HudsonAlpha Institute for Biotechnology. There he constructed … 5, 16, and 19. Following the completion of the Human Genome Project in 2003, he developed sequencing, assembly, and … DOE relevant cellulosic feedstocks. He provides scientific project management for the reference eukaryotic genomes …
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From Competition to Cooperation
… Tracking evolution of symbiotic lifestyles across multiple fungal lineages. … able to carry out a broader analysis than had ever been done before to look at how multiple forest fungi have independently evolved to establish symbiotic relationships with plants (mycorrhizae), and particularly how …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… Trained on environmental data, a new JGI tool more accurately … Berkeley National Laboratory (Berkeley Lab), led the project. He explained that large language models—artificial … binning process to prevent information loss as the training does not require complete genomes.  “So, we used the raw …
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Disclaimer
… NOTICE Information from this server resides on a computer system funded by the U.S. Department of Energy. Anyone using this system consents to monitoring of this use by … a particular purpose, or assumes any legal liability or responsibility for the accuracy, completeness, or usefulness of …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… over the last  25-plus years since the JGI’s inception, making it possible for researchers to get a close look … For example, with support from the  Exascale Computing Project , the JGI — along with the National Energy Research … through the Community Science Program, it was the largest project the JGI had ever put together.  “When we proposed to …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… deep subsurface ecosystem. The Science Altiarchaea are carbon-fixing microbes and targets of multiple viruses in … resist. The battle waged below the Earth’s surface is reconstructed by combining a study of microbial communities … The Impact Altiarchaea are abundant and dominant populations in oxygen-poor environments without oxygen deep below …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… In a recent  Nature Genetics paper , researchers focused on the full composition of genes, or pangenome, of the model plant  Marchantia … plant lineages in the  Open Green Genomes Initiative , a project supported by the U.S. Department of Energy (DOE) … Energy operated under contract no. DE-AC02-05CH11231. This project received funding from the European Research Council …
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Building Sphagnum Genomic Resources
… Sphagnome data would enable researchers’ insights on their potential carbon cycling impact.   The Science … (Spruce and Peatland Responses Under Changing Environments) project, assessing how northern peatland ecosystems respond … occupy different microhabitats – Sphagnum fallax and S. magellanicum. The draft genome for  S. fallax is already …
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Forming Scientific Connections and Building Community
… and seven graduate students from UC Merced through their long standing internship program. In just two months, the … and also made new friends while working on their summer projects. Watch the short video here to see what they had to … below are the interns, their mentors, and their summer projects. Each intern also mentioned what they loved about …
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Game On: High School Students Drive Everglades Metagenomics Study
… a member of JGI’s Sample Management Group, attended a conference in Florida to discuss a JGI pilot project involving soil sampling in the Florida Everglades to … researchers with the hope of getting support for a research project for his class of 18 juniors.  He got turned down …
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