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The Expanding Universe of Methane Metabolisms in Archaea
… Metagenome-assembled archaeal genomes provide new insights into an ancient metabolism. Methane is a greenhouse … database maintained by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science … by the other study co-authors, and reconstructed from these 10 metagenome-assembled genomes (MAGs) representing new …
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JGI Announces 2025 New Investigator Portfolio
… Ian Gilman, Louis Graf, Yuxi Guo, Shaomei He, Vayu Hill- Maini, Forrest Lefler, Pok Man (Bob) Leung and Huang Li; … and Mar Schmidt; [bottom] Cody Spiegel, James Tan, Emma Timmins-Schiffman, Andressa M. Venturini, Valentin Waschulin, … a widening circle of researchers whose work aligns with DOE missions .  Below find a list of researchers whose …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… Accepted proposals emphasize JGI interests in algae and secondary metabolites. A total of 27 … Program (CSP) call of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science … with 600 instructors worldwide who work with more than 10,000 undergraduate students each year. Brian Looney of …
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Defining a Pan-Genome for Antarctic Archaea
… Analysis of haloarchaeal metagenomes broadens understanding of Antarctic biogeography. The Science Haloarchaea … in Antarctic lakes, some of which have salinities 10 times that of seawater. To shed light on the global … Antarctica distinct and unique. In collaboration with the DOE Joint Genome Institute, a DOE Office of Science User …
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Effects of Polar Light Cycle on Microbial Food Web
… change with the seasons. The Science Light-harvesting bacteria (phototrophs) in Antarctica’s Ace Lake defy the … long ago, this shift to archaea being the main producer doesn’t occur here. Understanding this fundamental … cycles. Water samples from Ace Lake were collected over a 10-year period and sent to JGI for metagenomic sequencing. A …
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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… Multiple 2021 HPCwire Awards ” on the Berkeley Lab Computing Sciences site. Lawrence Berkeley National Laboratory … Energy Research Scientific Computing Center (NERSC), the DOE Joint Genome Institute (JGI), and the Energy Sciences … of JGI and ExaBiome Project team, supported by the DOE Exascale Computing Project. The award recognized the …
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JGI@25: From Life at the Extremes to Editing Genomes
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … Systems Mol Cell. 2020 Aug 6;79(3):416-424.e5. doi: 10.1016/j.molcel.2020.06.022. Wright AV et al. A Functional … Combining forces with UC Berkeley to seek elusive gene-editing …
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2024 Progress Report
… The Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase (KBase), the National … who made use of our data. We completed 39,870 projects in FY24 We generated 871 Terabases of sequence We …
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Doubling Down on Known Protein Families
… Using a novel computational approach, researchers confirm … by a team of scientists at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science … families. From there they focused on families with at least 100 members.  “If you have 100 sequences, the quality of the …
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Webinar: MycoCosm Tutorial
… Learn more about JGI’s  MycoCosm data portal , an interactive collection of sequenced fungal genomes, omics … the scientific questions asked and whether they are within DOE mission areas of bioenergy, carbon cycling, and … submit metadata and assembly at  https://gold.jgi.doe.gov 10.  Q: Is there any possibility to search for …
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Picking Up Threads of Cotton Genomics
… Analysis reveals cotton genome stability across global lineages . Come harvest time, the cotton fields look like … out of the green pods in every direction. There are 100 million families around the world whose livelihoods … including researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
… DNA Synthesis Science group held a  JGI Engagement: Accessing Functional Genomics Capabilities Webinar inviting researchers to submit white papers to the … of the proposals. Upon approval from JGI reviewers, the DOE project managers review the proposals. The proposer of …
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