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Examining the cause of high inbreeding depression: analysis of whole‐genome sequence data in 28 selfed progeny of Eucalyptus grandis
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… and stimulate a bioeconomy, where renewable, biological resources drive processes, products, and services.  … a vast range of organisms and ecosystems. These kinds of data could open opportunities along multiple avenues, … expect to offer our user community an exciting range of new tools and capabilities to support their scientific …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… — JGI researchers and collaborators work to create FAIR datasets to maximize returns on these advances. Over the … genome-resolved metagenomes and will be implementing new tools in KBase to tackle the bioinformatic challenges … MetaSIPSim … Microbes Persist SFA on KBase … Additional Resources …
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Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21T)
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Natural Prodcast Episode 23: Aaron Puri
… restricted niche. And they do need broad host-range genetic tools so it’s more complicated than working with something … thing I’ve learned is that when JGI gives you a ton of data you better have someone really smart to be able to … And so now that’s what I’m joking about having a lot of data. It’s a lot of metabolomics data sets. So what have we …
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Special Initiatives & Programs
… of DE-FOA-0003453, which is eligible for BERSS). Available Resources All JGI products are available through BERSS. … and products . A minimum request of 1 Tb of sequence data is required to qualify for BERSS. For DNA synthesis … science.  Projects include de novo generation of genome data, assistance in interpreting and/or building on an …
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Transcriptomic Data Sets for Zymomonas mobilis 2032 during Fermentation of Ammonia Fiber Expansion (AFEX)-Pretreated Corn Stover and Switchgrass Hydrolysates
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16S rRNA Gene Amplicon Sequencing Data from Flooded Rice Paddy Mesocosms Treated with Different Silicon-Rich Soil Amendments
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Applying Viral Genomics Expertise to Understanding the Human Virome
JGI researchers lend expertise to develop tools and data hub for NIH program. While the microbes in, … “ A consortium facilitation, coordination, and data management center for the HVP ," is related to developing an …
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Identifying the Microbial Cleanup Crew at a Superfund Site
The DOE has been similarly invested in environmental management, contributing to bioremediation efforts for … , they were able to analyze the resulting metagenomic data. (Data from the project are available on the  JGI … support was provided by the National Center for Research Resources (NCRR) (5P20RR016480-12) and the National …
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The Switchgrass Genome: Tools and Strategies
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UC Merced Interns Reflect on Their JGI Summer Projects
… worked on ranged far and wide — from implementing new data visualization tools, to using natural language processing techniques to … a fruitful experience for mentors and students alike. Tools like Slack, Google Docs, and GitHub enabled virtual …
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