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Genome‐wide associations with flowering time in switchgrass using exome‐capture sequencing data
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Fast and accurate identification of plasmids and viruses in sequencing data using geNomad
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Scaling Up Existing Skill Sets
… and insights on the project and everyone’s willingness to guide or mentor me during my internship.             Name: … I got to work with an enormous set of fungal genomics data. For me, it was an opportunity to adapt my existing … the door for me in the sense that I learned many different tools in bioinformatics research. Also, it consolidated my …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… .) This plan aligns the DOE Office of Science user facility with broader national efforts to promote and … a vast range of organisms and ecosystems. These kinds of data could open opportunities along multiple avenues, … expect to offer our user community an exciting range of new tools and capabilities to support their scientific …
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A One-Stop Shop for Analyzing Algal Genomes
The PhycoCosm data portal allows anyone to freely investigate the genes of … genomic data on algae into one place, PhycoCosm allows users to easily compile data that answers what genes are … in algae. PhycoCosm joins other online data portals and tools created by JGI researchers, including the Integrated …
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Gene Expression: From On-Off Switch to Dial
… systems, expanding the technologies available for other JGI users outside the realm of bioenergy optimization. Summary … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … of betaxanthins. They used combinations of single guide RNA, or a single RNA piece that recognizes a …
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Natural Prodcast Episode 7: Ben Shen
… first one, first that we call antibody drug conjugates, abbreviated as “ADC”, was approved in the year 2000, and … be useless unless you make the invention available to broad user groups. So, I view the project that we are working on … so everybody, readers of the library, can come to our databases and look for the specific information they are …
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PhycoCosm Tutorial
… interactive collection of sequenced algal genomes, omics data and comparative analysis tools developed by the Joint Genome Institute (JGI), a US Department of Energy Office of Science user facility at Berkeley Lab. Presented by Igor Grigoriev, …
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Genome-Scale Data Call for a Taxonomic Rearrangement of Geodermatophilaceae
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IMG/M: a data management and analysis system for metagenomes
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A synthesis of bacterial and archaeal phenotypic trait data
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Biases in genome reconstruction from metagenomic data
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