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Metagenomes and Metagenome-Assembled Genomes from Microbial Communities Fermenting Ultrafiltered Milk Permeate
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A One-Stop Shop for Analyzing Algal Genomes
… genes of more than 100 algae. The Science Interested in the genomes of algae? You now have one place where you can … Understanding the genetic underpinnings responsible for these traits takes us closer to harnessing algae for … in algae. PhycoCosm joins other online data portals and tools created by JGI researchers, including the Integrated …
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Who We Are
…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located … Berkeley National Laboratory. The JGI consists of around 280 researchers and support staff in the Integrative Genomics Building in Berkeley, California.  Our location at the IGB fosters team science and …
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A Natural Mechanism Can Turbocharge Viral Evolution
… dance between a virus and microbial cell is an embrace. For a virus with a “head-tail” morphology, this means using … ago, a team discovered a group of viruses that had in their genomes a surprising tool: a “diversity generating retroelement,” or DGR. The DGR …
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Impact of library preparation protocols and template quantity on the metagenomic reconstruction of a mock microbial community
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iVirus 2.0: Cyberinfrastructure-supported tools and data to power DNA virus ecology
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
For many scientists, the culmination of their work into a … determination. Rhondene Wint, an alumna of the DOE Joint Genome Institute (JGI)-UC Merced internship program and … predictor of gene expression levels using machine learning tools. “This was very exciting to see how Rhondene not only …
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Metagenomes, Metatranscriptomes, and Metagenome-Assembled Genomes from Chesapeake and Delaware Bay (USA) Water Samples
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User Advisory Committees
All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National … to establish with our stakeholders. The guiding principles for participating on JGI Advisory Committees are outlined in … within the user community. … The SAC is a board convened by the JGI Director to provide a scientific and technical …
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FinisherSC: a repeat-aware tool for upgrading de novo assembly using long reads
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Emiley Eloe-Fadrosh
… focuses on leveraging thousands of metagenomic datasets from host-associated and environmental samples to identify and characterize genomic information from uncultivated microbes and viruses. Prior to … training in human microbiome research at the Institute for Genome Sciences at the University of Maryland School of …
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MaxBin: an automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm
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