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JGI@25: From Life at the Extremes to Editing Genomes
… Science group led by Nikos Kyrpides , mining the Integrated Microbial Genomics & Microbiomes (IMG/M) system’s immense … Banfield is a pioneer in metagenomic studies, recovering microbial genomes from biofilm samples at the Richmond Mine … in a Two-Protein-type V-C CRISPR System. Mol Cell. 2019 Feb 21;73(4):727-737.e3. doi: …
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Fungal Friends or Foes in Plant Roots
… determine if these fungi act as friends or foes. The Impact Microbial communities comprised of fungi and bacteria can … work was partly enabled by a JGI Community Science Program (CSP) proposal led by INRAE’s Francis Martin that contributed … Contract No. DE-AC02-05CH11231 within the framework of CSP 1974 “1KFG: Deep-sequencing of ecologically relevant …
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Reevaluating the Salty Divide: Phylogenetic Specificity of Transitions between Marine and Freshwater Systems
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A metagenomic insight into freshwater methane-utilizing communities and evidence for cooperation between the Methylococcaceae and the Methylophilaceae
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Activity‐Informed Network Analysis Reveals Keystone Microbes Shaping Freshwater Ecosystem Function
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The Megadata of Lake Mendota – Part 3: Boating Out to David Buoy
… at how researchers get these specialized snapshots of a freshwater ecosystem. …
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JGI@25: Studying Sorghum’s Survival Skills
… including traits useful for adapting to harsh conditions. 2019: JGI and collaborators analyze the sweet sorghum RIO …
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How to Target a Microbial Needle within a Community Haystack
… strides in generating genome sequences for members of the microbial world through bulk community sequencing … of HCR-FISH+FACS for selectively enriching low abundance microbial groups from complex natural communities. This type …
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The Megadata of Lake Mendota - Part 1: Many, Many Mers
… of that lake for over 20 years, to understand how the freshwater ecosystem works.  So a few years ago, when they …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… Metagenome Stability Diagram — a tool within the Integrated Microbial Genomes and Microbiomes (IMG/M) platform — has … could allow them to manipulate microbiomes to facilitate microbial solutions to challenging environmental problems, … from diverse environments and grouped those with similar microbial communities together. Those similarities, based on …
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JGI Announces FY26 Large Scale Portfolio for Our Community Science Program
… and developing RNA barcoding systems to optimize microbial bioreactors. This genomic research creates new … of sequence. “We are thrilled to support this year’s CSP awardees as they embark on ambitious projects that span … research community. See below for the full list of 2026 CSP Large Scale Call recipients.    …
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Kjiersten Fagnan
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