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A metagenomic perspective on the microbial prokaryotic genome census
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… As SIP experiments shed more light on microbial communities than ever before — especially with … work to create FAIR datasets to maximize returns on these advances. Over the last two decades, Stable Isotope … easier to compare?” said Malmstrom, who worked with JGI Metagenome Program head Emiley Eloe-Fadrosh to host …
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Eelgrass Proves to Be Much Younger Than We Thought
… Recent study shows eelgrass has been around about 2.5 million years less than previously believed.  The Science … began colonizing the oceans  about 3 million years ago. The study shows that figure is likely closer to a mere 250,000 … This study was supported by a PhD scholarship from the China …
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New Biological Insights Into How Deforestation in Amazonia Affects Soil Microbial Communities Using Metagenomics and Metagenome-Assembled Genomes
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The Case for Conservation
… help improve crop yields.  The Science The fire moss Ceratodon purpureus is a short plant with a complex genome . Now, … technologies applied to the effort. The Impact Found on all continents, including Antarctica where it is a major … four times the size of the next largest chromosome. As the study first author Carey put it, these sex chromosomes first …
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Global Diversity of the Brachypodium Species Complex as a Resource for Genome-Wide Association Studies Demonstrated for Agronomic Traits in Response to Climate
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Systematic Identification of Gene Families for Use as “Markers” for Phylogenetic and Phylogeny-Driven Ecological Studies of Bacteria and Archaea and Their Major Subgroups
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Genome-Wide Association Studies across Environmental and Genetic Contexts Reveal Complex Genetic Architecture of Symbiotic Extended Phenotypes
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Understanding Wildfire Recovery, Starting in Soil
… a microbiome of bacteria, viruses and fungi process carbon and nitrogen, paving the way for future plants and trees … genes with functions useful for forest recovery, this study sheds light on how microbes contribute as a forest … which take inventory of which microbes are present. This study, published in Nature Microbiology , went a step …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… over the last  25-plus years since the JGI’s inception, making it possible for researchers to get a close look … to enable large-scale analysis. The story of a massive metagenome assembly for a time-series experiment from the … freshwater ecosystem works. When she set out to analyze 500 metagenomes from this sample set through the Community …
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Mission
… JGI Mission As a U.S. Department of Energy Office of Science user … genomic capabilities, large-scale AI-ready data and professional expertise to support the global research community in studies of complex biological and environmental systems. We optimize our service to the community …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… single drop of water could outnumber a small city’s population, the number of viruses in the same drop—the vast majority … much less those considered large and giant. In a recent study  published in the journal  Nature , a team led by … Program . The team mined more than 8,500 publicly available metagenome datasets generated from sampling sites around the …
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