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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… technology has changed dramatically over the last  25-plus years since the JGI’s inception, making it possible for … computing infrastructure and analysis. This way, JGI users — both primary, data-generating users, as well as … lead to better predictive models of global climate. They may also provide a basic understanding of the roles …
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Nikos Kyrpides
… at Argonne National Laboratory. Dr. Kyrpides’ research focus on Microbiome Research with an emphasis on Microbiome … S, et al. (2021) Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome. Nat Microbiol . … Mol Cell . S1097-2765 Schulz F, et al. 2020. Giant virus diversity and host interactions through global …
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Waiting to Respire
… popularizer and communicator (and at one time, the spouse of Lynn Margulis). The information was then used to predict the metabolic strategies applied by a common … an anaerobe revealed that the ancestor of all these groups may have been an anaerobe who relied on fermentative …
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Crysten Blaby-Haas
… Molecular Foundry, a nanoscale research and knowledge-based user facility at Berkeley Lab. She is spearheading the development of a joint user capability between the JGI and Molecular Foundry for … of Florida, working with Valérie de Crécy-Lagard on using comparative genomics to predict gene function in …
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Picking Up Threads of Cotton Genomics
… of the five major lineages of cotton;  G. tomentosum ,  G. mustelinum , and  G. darwinii are the others. All of these … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … you have to alter.’ Why should we invest in something that may not be an immediate benefit to us for a decade? We …
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Igor Grigoriev
… training at UC Berkeley and work in the pharmaceutical industry. He holds joint appointments as Fungal and Algal … geomics and PhycoCosm portal. Dr. Grigoriev engaged thousands of researchers in genome projects and organized numerous genomics workshops. … JGI. Click to learn more about the program's areas of focus, major initiatives and more.  …
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Rex Malmstrom
… the ocean. Later during his postdoctoral work at the Massachusetts Institute of Technology he developed a high … bacterial cells and amplifying their genetic material, thus bypassing the need to culture these microbes in the lab. … a similar single-cell genomics pipeline that provides JGI users access to the genomes of uncultured microbes.  His …
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JGI@25: From Life at the Extremes to Editing Genomes
… ecosystems around the world, conducting iterative searches using statistical analyses to continuously refine and improve the process of finding novel Cas … different species, there was a good chance that nature was using it to do something important.” Related Publications:  …
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Performance evaluation and tuning of BioPig for genomic analysis
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Fungal Friends or Foes in Plant Roots
… apparent. Similarly, the microbes found in plant roots may have unknown roles. Some plants and fungi have mutually … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … The team then compared this dataset against nearly 80 previously published fungal genomes on the JGI data portal …
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John Vogel
… to this, he served as a Research Molecular Biologist at the USDA for 12 years where he was a driving force behind the development of numerous genomic resources that fostered the widespread adoption … transformation pipeline and, in collaboration with industrial partners, generated hundreds of transgenic …
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Hydrogen production in photosynthetic microbial mats in the Elkhorn Slough estuary, Monterey Bay
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