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Expansion of Signal Transduction Pathways in Fungi by Extensive Genome Duplication
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A phylum-level phylogenetic classification of zygomycete fungi based on genome-scale data
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Transposable Element Dynamics among Asymbiotic and Ectomycorrhizal Amanita Fungi
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Cocultivation of Anaerobic Fungi with Rumen Bacteria Establishes an Antagonistic Relationship
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Survey of Early-Diverging Lineages of Fungi Reveals Abundant and Diverse Mycoviruses
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Supercharging SIP in the Fungal Hyphosphere
… a commonly-used process for studying microbial communities, with results published in the  November 2022 issue … microorganisms live in complex communities, like within soils or the gut, they are difficult to study individually. … microbial DNA is manually separated into a few different groups based on its density — DNA containing isotopes is …
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Cultivation of novel Atribacterota from oil well provides new insight into their diversity, ecology, and evolution in anoxic, carbon-rich environments
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… program and current PhD student, reached this milestone with a recent publication in Molecular Biology and Evolution … over a billion years old. It’s an insanely diverse group of organisms that include some delicious additions to a … acids are assembled, which then band together to build proteins. What Wint and her mentors discovered in the genomes …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
Earth’s climate. Most methane is produced in environments without oxygen through a process called methanogenesis. … to definitively prove two other archaea within the Thermoproteota phylum —  Korarchaeia and  Methanomethylicia   — … down potential sources of methanogenesis, with metagenomic support from the JGI. First they were able to identify the …
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Axel Visel
… of scientific policy, engaging in interactions with the scientific community at large. … 2021 LBNL … lipid metabolism in microalgae .  Nature Plants 1: 15107 Lupiáñez DG, Kraft K, Heinrich V, Krawitz P, Brancati F, … 89-93. Hess M, Sczyrba A, Egan R, Kim TW, Chokhawala H, Schroth G, Luo S, Clark DS, Chen F, Zhang T, Mackie RI, …
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Understanding Wildfire Recovery, Starting in Soil
A metagenomic look at the soil microbes present a year after a wildfire. The Science … a wildfire burns, recovery begins at the forest floor. Within the soil, a microbiome of bacteria, viruses and fungi … The Impact Healthy forests store carbon, filter water, and support all kinds of plants and animals, but with climate …
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Jeremy Schmutz
Mr. Schmutz’s involvement with the DOE Joint Genome Institute dates back to 1997, when … the completion of the human genome project in 2003, he developed sequencing, assembly, and improvement strategies … T., Lovell, J. T.., et al. 2023. JGI plant gene atlas: an updateable transcriptome resource to improve functional gene …
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