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Getting to the Bottom of Fungal Functions Across Earth’s Forests
The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … At that time, the field had surveyed many different soil communities for taxonomic diversity. These studies could … said, the 1000 Fungal Genomes project, together with other CSP projects, had sequenced over 2,000 fungal genomes. The …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
New 5-year strategic plan outlines how the JGI will advance … the bioeconomy, we are engaging with diverse and new user communities. And everything that we do will continue to be …
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Virus-Microbe Interactions of Mud Island Mangroves
… in Brett Baker’s lab at the University of Texas at Austin, will defend his dissertation. Some of his research was conducted at the JGI through the DOE Office of Science Graduate Student … worked with the JGI through a Community Science Program (CSP) proposal, and Rambo’s research builds on that. “The …
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Products
The JGI has diverse capabilities in: DNA and RNA sequencing, … Sample and library preparation, DNA synthesis and pathway engineering Mass spectrometry based metabolomics Below … Fungal Minimal Draft Lower coverage short-read whole genome shotgun sequencing Assembly, annotation ( Mycocosm ) 256/404 …
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In vitro Characterization of Phenylacetate Decarboxylase, a Novel Enzyme Catalyzing Toluene Biosynthesis in an Anaerobic Microbial Community
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In-depth Spatiotemporal Characterization of Planktonic Archaeal and Bacterial Communities in North and South San Francisco Bay
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From Competition to Cooperation
By comparing 135 fungal sequenced genomes, researchers were able to carry out a broader analysis than had ever been … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … the framework of the Mycorrhizal Genomics Initiative (CSP # 305), Metatranscriptomics of Forest Soil Ecosystems …
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Sequencing and functional validation of the JGI Brachypodium distachyon T‐DNA collection
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Computationally Classifying Fungal Lifestyles
Machine learning methods were applied on sequenced fungal genomes to classify gene … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … enabled in part through  JGI’s  Community Science Program (CSP) , as several approved proposals have contributed toward …
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Toward More Efficient Artificial Photosynthesis
… factories in plant cells. Using photosynthesis, they take raw materials including sunlight, carbon and water, to convert … was enabled in part through the Community Science Program (CSP) of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Better Genome Editing for Bioenergy
… in microbial oil production. The Science CRISPR-Cas9 is a powerful, high-throughput gene-editing tool that can help … at the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility. Y. lipolytica … work was supported by DOE Joint Genome Institute grant  CSP-503076 (IW, HA, and MB) and NSF  1706545 (IW). HA and JW …
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Detection of short-term cropping system-induced changes to soil bacterial communities differs among four molecular characterization methods
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