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Learning to Look
Machine learning approach significantly expands inovirus … called inoviruses, which are filamentous viruses with small, single-stranded DNA genomes and a unique chronic … turn affecting the microbe’s own eukaryote host. As their small genomes can be easily manipulated through genetic …
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Training the Next Generation of Talent
New Graduate Internship Program Builds Bridges Between DOE JGI, UC Merced … RNA-Seq assembly. RNA-Seq is a technique for profiling the small fraction of a genome that contains transcribed … “This is the first iteration of this program and we started small with just two people,” Visel says. “They were directly …
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Doubling Down on Known Protein Families
Using a novel computational approach, researchers confirm microbial diversity is wilder than ever. Imagine researchers exploring a dark room with a flashlight, only able to clearly …
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Fishing for Novel Cellulose Degraders
A “bait and hook” single-cell genomic approach to bioprospecting. The Science One of the most vital pieces of equipment … cell sorting to sort cells into several small pools, followed by whole genome amplification and …
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An Integrated Dataset to Understand Ecosystem Interaction
… yields a comprehensive tree and soil dataset for understanding the dynamic relationship between poplar trees and their … work and how healthy they are, a recent data set  outlined in  Scientific Data connects molecular features to … Metabolomics allowed them to then examine the chemicals and small molecules produced by the trees and associated …
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VirSorter2: a multi-classifier, expert-guided approach to detect diverse DNA and RNA viruses
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Parallel Evolution of Truncated Transfer RNA Genes in Arachnid Mitochondrial Genomes
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Honey Bee Gut Microbiota Divvy Up Dinner
Scientists find bee gut microbes have a division of labor when it comes to metabolizing complex polysaccharides. Honey bees are invaluable … in the bee’s ileum, a structure analogous to the human small intestine; and  Bifidobacterium,  which dwells …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… s ditched their flagella and other traits when migrating back to the ocean. The Science Scientists have discovered flagella in an unexpected place: hot spring-dwelling bacteria from … adaptation to marine environments. These bacteria are so small, it’s possible flagella would be a liability in open …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
Puerto Nuevo is a small town along the Baja California coastline in Mexico. While conducting early field studies related to …
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Metatranscriptomic reconstruction reveals RNA viruses with the potential to shape carbon cycling in soil
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… the JGI’s 25th anniversary celebration, the 2022 Annual Meeting featured speakers who shared a look back at the JGI’s … inception as part of the Human Genome Project. He managed a small but important part of that program — looking at … challenges and addressing the problems early when they’re small, easier to deal with and before they grow into big …
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