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Enlarging Windows into Understanding Gene Functions
… JGI innovates protocol revealing how genetic variations in sequences … workflow that reduces the time and cost associated with this purification step, and Baumgart continued and … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… proposals have been accepted from 70 full submissions based on 92 letters of intent. Additionally, 40 percent … poorly-studied algal and viral genomes, and integrate with key DOE Office of Biological and Environmental Research … new investigator proposal last year, and he noted that the experience proved beneficial for the large-scale call. “I am …
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A Community Resource for Secondary Metabolite Researchers
… The Secondary Metabolism Collaboratory encourages user engagement. … an interactive public database for the research community. With more than 13 million BGCs in the catalog at the time of … Facility located at Berkeley Laboratory, built off past experience in developing a secondary metabolites portal …
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UC Merced Interns Reflect on Their JGI Summer Projects
… this past summer, 10 students from UC Merced worked closely with JGI scientists on research projects that contribute to the larger mission … but virtual events and technology enabled a fruitful experience for mentors and students alike. Tools like Slack, … Intern: Sidharth Babu (undergraduate) Mentor: Zhong Wang Click the image to watch the video …
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The Busy World of Deep Sea Eruptions
… The ocean depths are vast and dark. But there are hotspots on the ocean floor … and understanding how they’ve adapted to this extreme environment.   …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… Puerto Nuevo is a small town along the Baja California coastline in Mexico. While … patterns of Puerto Nuevo’s coastal waters and sediment with collaborators at the Center for Scientific Research and … collaborative working environment I have consistently experienced each visit through my PhD. This environment …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… Team develops a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring polar bears in winter scenes that came with crayons in various shades of white. To researchers … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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JGI User Executive Committee Expands
… of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). They are: Ivan Baxter of the … and Kevin Solomon of the University of Delaware. Along with the existing UEC members, their areas of study span the … He’s also bringing his fungal genetics expertise and experience as a primarily fungal genomics user, he aims to …
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Plant Program
… With collaborative user projects, the JGI’s Plant Program delves into … challenges by exploring plants’ role in capturing carbon, detoxifying soils, interacting with other organisms, and adapting to environmental changes. The program lays the groundwork for … biological and ecological roles to foster sustainable solutions for energy, agriculture and the environment. At its …
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Boosting Small Molecule Production in Super “Soup”
… Do metabolic pathways from engineered yeasts still work in cell-free environments? (Spoiler: Yes.) Think of cells as tiny factories: within their walls they have both the machinery to make … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… This is excerpted from the full announcement “ Berkeley Lab Receives Multiple 2021 HPCwire Awards ” on the Berkeley Lab Computing Sciences site. Lawrence … multi-terabyte datasets assembled for the first time with  MetaHipMer , taking advantage of scalable parallel …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… Sequencing technology has changed dramatically over the last  25-plus years since the JGI’s inception, making it possible for researchers to get a close look … such tools has been a collaborative effort. For example, with support from the  Exascale Computing Project , the JGI …
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