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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… data from the 1000 Fungal Genomes project to form new connections between fungal guilds, genes and function. If a … Auer, a research engineer at INRAE and one of the first authors of this work.  To compare these trophic guilds, this … and annotated these genomes in collaboration with dozens of partners. “This was a tremendous community effort, with over …
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Jane Grimwood Named HudsonAlpha Genomics Chair
Congratulations to Jane Grimwood, who has been appointed the … Spencer Chair in Genomics at the HudsonAlpha Institute for Biotechnology! Loretta Spencer served as a manyterm mayor of … that Grimwood contributed to include: A 2021 Nature paper announcing a high-quality reference sequence of the …
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New Research Sheds Light on Diversity in the Deep Sea
Microbial communities living near hydrothermal deep-sea vents hold … and other biomolecules that could potentially be applied to biotechnology and medicine. A more robust understanding of … to the study as well as  genome analysis, providing authors a more complete picture of the taxonomic composition …
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2024 Progress Report
Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area are … over the last year include:  A decade of work led by an international consortium culminated in a reference for the … and analysis workflows that we offer. We welcomed interns and visiting scientists from around the world — and …
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Gut Fungi: Unexpected Source of Novel Chemicals
Fungi from herbivore poop make surprisingly complex compounds — an energetically expensive feat thought … help them digest their last leafy meal. In their evolutionary history, these fungi branched off early from aerobic … Fellowship, and the UCSB Connie Frank Fellowship. The authors acknowledge support from the Center for Scientific …
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Igor Grigoriev
Microbial Biology at University of California, Berkeley. He contributed to the Human Genome Project and led annotation … Nature Genet.  49(6):964-968. Mock et al (2017) Evolutionary genomics of the cold-adapted diatom  Fragilariopsis … Riley et al (2016) Comparative genomics of biotechnologically important yeasts.  Proc Natl Acad Sci U S …
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Enlarging Windows into Understanding Gene Functions
JGI innovates protocol revealing how genetic variations in sequences affect … 2021 in Nature Methods , JGI researchers led by co-first authors Leo Baumgart and Juna Lee developed two approaches … to further their research, watch the JGI Engagement Webinars series. Letters of Intent for the next annual Community …
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A Plant Root Atlas for Tracking Developmental Trajectories
A collaborative team led by Geoffrey Schiebinger at the … cells in these processes.   One of the study’s co-authors is  Benjamin Cole , a research scientist at the U.S. … hallmarks of different cell types.” His contribution to the paper also aligns with his DOE  Early Career Research …
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An amoeba and a cyanobacterium walk into a bar...
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… novel, candidate viral genome found in the deep subsurface ecosystem. The Science Altiarchaea are carbon-fixing microbes … They are abundant representatives of deep subsurface ecosystems. A team of researchers described how the viruses … Science Foundation (grant number DFG PR1603/2-1). The authors acknowledge sampling logistics provided by the …
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
Back in 2011, JGI-supported researchers published a paper in the journal Science . It detailed how they’d used … is now used across California State University campuses for biotechnology education as part of a course-based undergraduate resource experience. Hear from …
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Uncovering Novel Genomes from Earth’s Microbiomes
Large-scale comparative analysis leads to identification of biosynthetic … is now available and  described November 9, 2020 in  Nature Biotechnology . Known as the GEM (Genomes from Earth’s … access environments, and invited these researchers to be co-authors as part of IMG data consortium,” she said. Listen to …
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