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Viral Genomics Group
Genomics group . Research Team … Coclet, C. and Roux, S. (2021) Global overview and major challenges of host … Opinion in Virology .  49 , 117-126 Berg, M. and Roux, S. (2021) Extreme dimensions — how big (or small) can tailed … Nature Reviews Microbiology.   19 , 407 Berg, M. et al. (2021) Host population diversity as a driver of viral …
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User Support
The JGI Project Management Office carries out a number of activities to facilitate world-class science. DOE JGI Project Managers collaborate with users to develop … a formal Statement of Work (SOW). All work performed at the JGI is initiated via the Work Initiation Process (WIP) …
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CSP Functional Genomics
… function.  The emphasis is on projects leveraging JGI’s DNA synthesis and ‘omics capabilities to enhance … without the capabilities and expertise available at the JGI. Proposals to this call may be submitted to the JGI at any time using a simple web-based form and are …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… to date. This paper  is the cover article for the April 2024 issue  of  Nature Plants .  “We wanted to better … the surrounding neighborhood,” said Benjamin Cole, senior author of this work. Cole is a research scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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An Automated Tool for Assessing Virus Data Quality
… uncultivated viruses. Following up on those guidelines, JGI researchers have now developed CheckV (pronounced … by research scientist Stephen Nayfach, the study’s first author in the Microbiome Data Science group led by Nikos … DE-AC02-05CH11231. This work was also supported the grant #2016/23218-0 from São Paulo Research Foundation (FAPESP). …
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Informatics Advisory Committee
The IAC is chartered by the JGI Chief Informatics Officer (CIO) and reports to the JGI Director. The IAC is chartered to render advice, … the effective management and strategic objectives for the JGI’s data science, informatics and information technology …
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Synthesis
… assembly and analysis Overview of synthesis products The JGI DNA Synthesis platform enables users to validate … develop, deploy, and maintain software that support the JGI’s Synthetic Biology Program.    Representative software … and associated tools, which track samples through the JGI’s Synthetic Biology pipeline as well as provide process …
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The Expanding Universe of Methane Metabolisms in Archaea
… into an ancient metabolism. Methane is a greenhouse gas 20 times more potent than carbon dioxide. Billions of years … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, for publicly … available metagenome data provided by the other study co-authors, and reconstructed from these 10 …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … — ‘What are they doing? How do they interact?’” said senior author Francis Martin, a Research Director Emeritus at the … of these varied biomes; the forests share only about 20% of their fungal species. To make useful comparisons, the …
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Massie S. Ballon
S. Ballon is the Communications and Outreach Manager at the JGI. Prior to this role, she served as the primary storyteller and social media manager for the JGI. She produced both text-based and multimedia stories … Equity & Accountability (IDEA) Chairs Council.   … 2020-2021, UC Women’s Initiative (North Cohort) UC Managing …
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Doubling Down on Known Protein Families
… big the room is.  A new study  published online Oct. 11, 2023 in  Nature highlights the vast array of functional … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … and identified many novel structure predictions,” said lead author on the paper Georgios Pavlopoulos, now a research …
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Taking Stock of the Known and Unknown Microbial Space
… to the global research community.  Published January 17, 2025 in Science Advances , researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … of their diversity we've actually captured,” said co-first author Dongying Wu, a member of the Functional Annotation …
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