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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… version of a specific chemical, where ordinary Carbon-12 atoms are swapped for the heavier, non-radioactive … reuse and compare data. “So we thought, let's go on a pilgrimage. Let's make a difference, from a different direction — … for a SIP-focused workshop at the JGI in the fall of 2024. “ We wanted to get into the nitty gritty with the …
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Jane Grimwood Named HudsonAlpha Genomics Chair
JGI was established to work on the Human Genome Project in 1997. She was a group lead at Stanford Human Genome Center … publications that Grimwood contributed to include: A 2021 Nature paper announcing a high-quality reference sequence … The DNA sequence and biology of human chromosome 19 The DNA sequence and comparative analysis of human …
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JGI@25: Studying Sorghum’s Survival Skills
… and thrive — some varieties grow their leafy stalks 16 to 18 feet into the air. Beyond being a staple grain eaten … for Sorghum bicolor . Since then, 2,993 publications, 107 patent applications, and 53 patents have cited that …
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John Vogel
Dr. Vogel joined JGI in 2014 to establish a plant functional genomics program. Prior … he served as a Research Molecular Biologist at the USDA for 12 years where he was a driving force behind the development … Brachypodium. Genetics, 223 (2), art. no. iyac146 DOI: 10.1093/genetics/iyac146 Gordon, et. al. 2020 …
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Kjiersten Fagnan
Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, after … into scalable methods for scientific data analysis. In 2014 Dr. Fagnan became the JGI-NERSC Engagement Lead with a … JGI workloads. Dr. Fagnan was appointed CIO of the JGI in 2016, and in 2018 was hired to be the JGI’s Data Science and …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… make it a viable candidate bioenergy feedstock crop. In 2018, the JGI had sequenced and assembled the genomes of two … switchgrass gardens to track crop productivity across 1,100 miles and eight states. In 2021, using switchgrass …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… to boost understanding of environmental viruses. In 2016, Nikos Kyrpides at the JGI led a team that combed datasets from around the world, finding over 125,000 partial and complete viral genomes. That study … multiplied the number of known viral genes by a factor of 16. The same year, the JGI expanded its existing Integrated …
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Introducing New Members of the JGI User Executive Committee
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… and efficiently harvest the energy they store.      Since 2012, O’Malley has worked with the JGI to understand the … kinds of supplies in the quest to break down plants.  In 2016, her team leveraged transcriptomics and other assays to … that work like assembly lines for efficiency.  In 2021, her team saw that four strains of anaerobic fungi also, …
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Axel Visel
Dr. Visel joined the DOE Joint Genome Institute in 2010. As the Deputy for Science Programs, he focuses on the … Dr. Visel also served as JGI Interim Director from March 2016 – March 2017.   … Axel Visel is the JGI's Deputy for Science Programs. …
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JGI@25: Building a Better Bean
… the common bean. That work was published online June 8, 2014 in the journal Nature Genetics . “Common beans are a … common bean’s nutritional value, providing anywhere from 10-30% of daily protein requirements. It is also an … to sequence a genome.” Since the paper was published in 2014, it has been cited 1,025 times and the seemingly humble …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… as well as efficient engineering of biofuels. Since 2010, the JGI has partnered with researchers around the world to map out genomes of rumen microbes. In 2018, through a JGI Community Science Program proposal that … researchers put together what they called the Hungate1000, a catalog of 410 rumen microbe genomes. The project …
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