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The Transcription Factor Roc1 Is a Key Regulator of Cellulose Degradation in the Wood-Decaying Mushroom Schizophyllum commune
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Green Algae Reveal One mRNA Encodes Many Proteins
… and first author of the article. The research team included scientists at the University of California (UC), Berkeley, UCLA, UC Davis, Brookhaven National … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… bases — a terabase — of soil RNA for this project, and produced the reference genomes that allowed for mapping these … use around the world. These tools give researchers a way to access much more information about fungi in these … tree of life. Martin is one of the project leads. After starting with about 200 fungal genomes, in just a few years, …
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A One-Stop Shop for Analyzing Algal Genomes
… of its kind, with an interactive browser that allows algal scientists and enthusiasts to look deep into more than 100 … roles in global carbon cycling, are sources of natural products, and have potential as biofuel feedstocks. … sequence and understand. A team of researchers led by Algal Genomics Program lead Igor Grigoriev and data scientist Alan …
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JGIota: The Algae Nicknamed ‘Chlamy’
… reinhardtii – that’s managed to have a big impact. UC Berkeley plant biologist Sabeeha Merchant explains why … Merchant is also a faculty scientist in the Environmental Genomics & Systems Biology Division of the Berkeley Lab …
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Work With the JGI! Tips for a Winning CSP Proposal
The JGI’s Community Science Program gives researchers access to all kinds of sequencing, ‘omics and bioinformatics capabilities — and it’s open to scientists at any career stage, anywhere in the world, for …
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JGI@25: Using Team Science to Build Communities Around Data
… for an encyclopedia of reference genomes for fungal metagenomics. Two more CSP proposals came in 2016 that would … these initial efforts: Spatafora and Jason Stajich from UC Riverside would focus on broad sampling of early … lineages in the land plant tree of life.   As of the start of 2022, there were 120 principal investigators …
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A Mentor’s Perspective on Training the Next Generation
Over the years, hundreds of interns have come to the JGI from all parts of the globe to …
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Applying Viral Genomics Expertise to Understanding the Human Virome
While the microbes in, on and around Earth outnumber the stars in the Milky Way, viruses outnumber the microbes by at least another order of magnitude. For years, scientists at the DOE Joint Genome Institute, a DOE Office … in developing and managing public viral genomics resources such as analytical tools and data repositories to two …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
Identifying and breeding varieties that have high productivity across a range of environments is becoming … soils and water conditions, standing taller than basketball star LeBron James. In each garden, switchgrass plants … sites. “This paper is a combination of really cutting-edge genomics and genetic analysis with large scale data …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… future. Find recordings and recaps of these talks below, starting with Ari Patrinos. The Genomics Arms Race Ari … the human genome.  By 2000, a drafted human genome was produced by a joint effort between public and private sectors … with the FICUS program, through which researchers can access multiple DOE facilities with a single proposal. From …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… trait for domesticated crops because it leads to reduced harvest yields. Over thousands of years, farmers have … a large-scale genome infrastructure with a reasonably accessible system,” said Schmutz. “Building the pan-genome … their involvement; it’s something we wouldn’t have even started.”  The reference genome of Setaria viridis is …
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