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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) … Program, and coordinates the development of the virus and plasmid workflows for the National Microbiome Data … data quality and sharing, and data workflows and management best practices that have advanced the microbial sciences. …
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Tanja Woyke
… which she deciphered function and host-symbiont interplay using metagenomics. Taking on a Research Scientist position … as well as our Deputy of User Programs. Click to learn more about the program's areas of focus, major initiatives and … 578, 432-436. Bowers et al. 2017. Minimum information about a single amplified genome (MISAG) and a metagenome- …
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Emiley Eloe-Fadrosh
… microbial ecology and metagenomics. Her current research focuses on leveraging thousands of metagenomic datasets from … Science Program Head at the JGI. Click to learn more about the program's areas of focus, major initiatives and … for major journals and funding agencies and philanthropic organizations including Nature, Nature Biotechnology, Nature …
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Scaling Up Existing Skill Sets
… experience working intermediately between academia and industry, which is something I didn’t even know existed before. … my Ph.D. What is/has been one of your favorite things about your JGI internship?  Doing the JGI internship has … from private industry. I really liked the fairly flat organizational structure, and found everyone to be welcoming …
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Partnerships: Myco-Ed
… analysis.  MycoCosm provides data and tools via a graphical user interface, ensuring that no programming knowledge or … is required to perform computational analyses. The Mycocosm user interface is designed for use by mycologists and … Systems Biology Knowledgebase (KBase) is involved in the organization and development of Myco-Ed. Eventually assembly …
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Fungal & Algal Program
… to unlock their potential for bioenergy, environmental sustainability, and bioproducts. By sequencing and analyzing … genomic potential into practical applications, including sustainable biofuels, biomaterials, natural products, and … biodegradation and biogeochemistry. The program’s focus is on large-scale sequencing efforts that survey the vast …
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JGIota: The Algae Nicknamed ‘Chlamy’
This shorter episode is about a tiny, single-celled alga – Chlamydomonas reinhardtii … managed to sequence its genome, and what it has to teach us about other organisms – like plants. [ Editor’s Note: …
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Computationally Classifying Fungal Lifestyles
… and feedstocks for biomass and biofuel production. Learning about the ecology and evolution of  Dothideomycetes could … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … Dothideomycetes species, and also provides more information about speciation events. … The work conducted by the U.S. …
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JGI-KBase Panel at SACNAS
… through the Department of Energy-funded National Labs, User Facilities and Programs, and introduce best practices for anyone to get credit for their … to gain research experience and how students were able to use these experiences to get credit for their scientific …
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Axel Visel
… in 2010. As the Deputy for Science Programs, he focuses on the development and implementation of strategic … the JGI's Deputy for Science Programs. Click to learn more about our seven science program — their areas of focus, … Luo S, Clark DS, Chen F, Zhang T, Mackie RI, Pennacchio LA, Tringe SG, Visel A , Woyke T, Wang Z, Rubin EM (2011). …
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VEGA Symposium
… together a “Viral EcoGenomics” community to foster discussion on how to best capture and characterize uncultivated viruses, understand the role of viruses in natural ecosystems, …
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Training the Next Generation of Talent
Joint Genome Institute (DOE JGI), a DOE Office of Science user facility, Keedrian Olmstead was back on campus at the … several programs for RNA-Seq assembly to determine which is best for the task at hand. “There are at least 30-40 … Olmstead and Lawrence back on campus, Visel and Wang are already looking forward to opening the graduate internship …
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