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JGI announces final round of 2022 Functional Genomics awardees
… the JGI accepts proposals for state-of-the-art functional genomics research from potential users who need help translating genomic information into … the next deadline is July 31. You can learn more about our Community Science Program here .  …
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JGI@25: Using Team Science to Build Communities Around Data
The 1KFG project represents affiliations at over 180 organizations in 29 U.S. states and 35 countries. (Graphic: … for an encyclopedia of reference genomes for fungal metagenomics. Two more CSP proposals came in 2016 that would … Spatafora and Jason Stajich from UC Riverside would focus on broad sampling of early diverging fungi, and Francis …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… analysis leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple … knowledge. In a study published November 11, 2022, in Cell Genomics , the team focused on Actinobacteria ( … information as well as of important descriptive metadata about each strain. “This has been a very fruitful …
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Uncovering Novel Genomes from Earth’s Microbiomes
… analysis leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple … and the  DOE Systems Biology Knowledgebase (KBase) . Metagenomics is the study of the microbial communities in the … she said. Listen to study co-author Dan Udwary talk about genome mining using the GEM catalog in  this episode …
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Building Sphagnum Genomic Resources
… resources to build up Sphagnum as a plant model system focused on carbon cycling studies, rather than for food or fuel … decomposed matter, and researchers estimate that they hold about 25 percent of the world’s soil carbon. In high … unparalleled model system for ecological and evolutionary genomics .” Understanding the nature and genetic basis of …
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A Collaboration to Improve Plant Genome Annotations Across Species
To provide broad plant genomic capabilities, the DOE Joint Genome Institute works … specific conditions – in over a dozen plants. To learn more about the project, HudsonAlpha’s Research Communication … It was developed to improve plant genome annotations at the US Department of Energy (DOE) Joint Genome Institute (JGI)*, …
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Jeremy Schmutz
… years, Mr. Schmutz has directed the JGI Plant Program, focusing on the organization of community driven science for JGI Plant … Plant Science Program Head at the JGI. Click to learn more about the program's areas of focus, major initiatives and …
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High-Quality Draft Genome Sequence of Desulfovibrio carbinoliphilus FW-101-2B, an Organic Acid-Oxidizing Sulfate-Reducing Bacterium Isolated from Uranium(VI)-Contaminated Groundwater
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Making a Lichen Together
… time, a team analyzes the transcriptomes of a lichen fungus and alga to understand their partnership more clearly. … comprised of two (or more) participants. One is a fungus (usually belonging to the ascomycetes, one of the two … in the lichen lifestyle. The team’s results appear in  BMC Genomics . To explore the genomes, Armaleo and colleagues …
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Reactive iron, not fungal community, drives organic carbon oxidation potential in floodplain soils
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Refining the Process of Identifying Algae Biotechnology Candidates
… ] The Science The recipe for growing algae as a source of sustainable biofuels seems fairly simple: place these algae … feedstocks that can thrive in saltwater mitigates concerns about diverting resources such as arable land and fresh … capacity to produce enough algal biomass to yield the equivalent of 10-27 billion gasoline gallons if target yields …
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A Grass Model to Help Improve Giant Miscanthus
Miscanthus  sequence offers insights into benefits of polyploidy and … perenniality. The Science A reference genome sequence and genomic toolkit for the perennial grass Miscanthus sinensis has been published. Analysis of the genome …
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