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Taking Stock of the Known and Unknown Microbial Space
Metagenomic datasets could help map out microbial diversity … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … assesses what fraction of the microbial diversity we know about, and proposes a path forward to curate and cultivate …
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Direct Comparisons of Illumina vs. Roche 454 Sequencing Technologies on the Same Microbial Community DNA Sample
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JGI Scientists Pen Genome Watch Articles
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … Laboratory, are sharing their expertise in environmental genomics by writing for the column Genome Watch in  Nature … .  The latest article, published January 27, is about engineering plants and their microbiomes for more …
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Comparative genomic and physiological analysis provides insights into the role of Acidobacteria in organic carbon utilization in Arctic tundra soils
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Conversion of Amazon rainforest to agriculture alters community traits of methane‐cycling organisms
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Hiroshi Otani
… particularly actinomycetes. His research activity is focused on developing and implementing new technologies and methodologies that facilitate discovery of … Otani H, Udwary DW, Mouncey NJ. Comparative and pangenomic analysis of the genus Streptomyces. Sci Rep. 2022 …
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Pinning Down a Piece of Photosynthesis
… an array of experiments at universities and national user facilities, researchers found that this protein detects … we were able to work with on this project to ask questions about structure and function,” Blaby-Haas said.  Looking at … what is now the  Community Science Program Functional Genomics proposal call, the JGI synthesized hundreds of  …
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Enlarging Windows into Understanding Gene Functions
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … in the genome by adding tagged transcription factors to a genomic DNA library. “It’s an innovative way to rapidly … as tough as it has been 10 years ago,” he said. “We thought about reconstructing gene regulatory networks, understanding …
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DOE Metrics
… hours.   FY 2024 DOE Metrics There were 2,456 unique* JGI users in FY2024 , which includes Principal Investigators … new computational developments for improving microbial, metagenomic, or plant genome assemblies. [Download PDF] Q2 – … (LIMS) and temporary shut down of the sequencing production line to accommodate data migration requirements. Q3 actual …
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Eelgrass Proves to Be Much Younger Than We Thought
Recent study shows eelgrass has been around about 2.5 million years less than previously believed.  The Science Eelgrass, one of the most … Program (CSP 502951, 2016, Population and evolutionary genomics of host–microbiome interactions in Zostera marina …
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Building Sphagnum Genomic Resources
… resources to build up Sphagnum as a plant model system focused on carbon cycling studies, rather than for food or fuel … decomposed matter, and researchers estimate that they hold about 25 percent of the world’s soil carbon. In high … unparalleled model system for ecological and evolutionary genomics .” Understanding the nature and genetic basis of …
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Jeremy Schmutz
… years, Mr. Schmutz has directed the JGI Plant Program, focusing on the organization of community driven science for JGI Plant … Plant Science Program Head at the JGI. Click to learn more about the program's areas of focus, major initiatives and …
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