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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep subsurface ecosystem. The Science … by combining a study of microbial communities (metagenomics) and a chemical labelling approach. The Impact … , information the Probst lab used to search for and find 13 additional predicted viral  genomes . The team dubbed …
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JGI-UC Merced Interns Share Their 2021 Experiences
… During the summer of 2021, 13 interns from UC Merced spent eight weeks working virtually … Evaluation of Binning Tools for Microbial Eukaryotes in Metagenomes … Making Big Data Metagenomic Clustering Scalable … Pan-genome Graphs: Approaches for Complete Categorization of …
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Trent Northen
… Northen’s research is focused on using metabolomics to link genomes with environments to understand how webs of microbes … Schadt, C., Martin, S., Carrell, A. et al. An integrated metagenomic, metabolomic and transcriptomic survey of Populus … Wang G et al. Chassis-Independent Recombinase-Assisted Genome Engineering Enables Rapid Activation of Biosynthetic …
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Tracking the Origins of Methane-Producing Microbes
… Mini-Metagenomics Approach Helps Identify Novel Archaeal Methane … Biohub, and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user … Obsidian Pool hot spring. The researchers applied mini-metagenomics to these samples by sorting the microbes into …
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10 From JGI on the 2019 Highly Cited Researchers List
… papers published and cited between 2008-2018.” Less than 6,300 Highly Cited science and social science researchers in … a long-term project to sequence, annotate and analyze the genomes of more than 300 Aspergillus Go here to learn more … the minimum amount of information for an uncultivated virus genome, including the source, methods of identification of …
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The Power of One, Amplified
… of how large-scale single cell genomics complements metagenomics studies. The Science Researchers demonstrated the … sequencing approaches including amplicon and metagenomic sequencing. For example, they showed that the … mobile genetic elements that were missed within paired metagenome assembled genomes (MAGs), and that dominant …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… year, the JGI team reported the first closed and finished genome derived from an uncultured bacterial single cell – a … more than 200 microbial genomes that were mapped to nearly 30 major previously uncharted branches of the tree of life. Used in tandem over the years, metagenomics and single cell genomics have afforded JGI users …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… researchers focused on the full composition of genes, or pangenome, of the model plant  Marchantia polymorpha. Commonly … M. polymorpha is also among one of the plants representing 35 major evolutionary plant lineages in the  Open Green Genomes Initiative , a project supported by the U.S. …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… from its beginnings in the sequencing for the Human Genome Project out to the future of the institution. Their … multiple DOE facilities with a single proposal. From the vantage point of JGI’s 25 years fueling discovery, Anderson … are numbers out there, Drell noted, including the figure 30-million fold: How much JGI’s productivity has increased …
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Tracing the Evolution of Shiitake Mushrooms
… New genomes highlight the diversity of white rot fungi in the … around the world. By complete sequencing of 24 new mushroom genomes, and assembling genomes from 60 existing sequences, … Researchers sequenced 11 samples from Asia–Australasia and 13 samples from the Americas to trace the evolution …
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Nandita Nath
… Nandita is involved in developing new methods to improve genome recovery from single cells and to build sequencing …
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JGIota: Looking Back at Sequencing for Soybeans
… fields. So in 2010, the JGI helped publish the original genome sequence for the soybean, Glycine max. With a full genome sequence, researchers have been able to look into …
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