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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep subsurface ecosystem. The Science … by combining a study of microbial communities (metagenomics) and a chemical labelling approach. The Impact … do so, they compared samples collected from an aquifer in 2012 and 2018 against a biofilm sample collected in 2018. …
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JGI-UC Merced Interns Share Their 2021 Experiences
… During the summer of 2021, 13 interns from UC Merced spent eight weeks working … development enrichment activities. For some students in the 2021 cohort, this was their first internship experience, … Evaluation of Binning Tools for Microbial Eukaryotes in Metagenomes …
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Trent Northen
… Scientist at Berkeley Lab. Since joining Berkeley Lab in 2008, Dr. Northen has had leadership roles within large … Joint BioEnergy Institute and the ENIGMA SFA project. In 2015, he founded what is now the JGI Metabolomics Program to … Northen’s research is focused on using metabolomics to link genomes with environments to understand how webs of microbes …
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Tracking the Origins of Methane-Producing Microbes
… Mini-Metagenomics Approach Helps Identify Novel Archaeal Methane … three pathways for methanogenesis: hydrogen-dependent and CO2-reducing, or hydrogenotrophic (most common); … Biohub, and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user …
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10 From JGI on the 2019 Highly Cited Researchers List
… the IP & Science arm of Thomson Reuters, has released their 2019 list of Highly Cited Researchers , which includes 10 … a long-term project to sequence, annotate and analyze the genomes of more than 300 Aspergillus Go here to learn more … the minimum amount of information for an uncultivated virus genome, including the source, methods of identification of …
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The Power of One, Amplified
… of how large-scale single cell genomics complements metagenomics studies. The Science Researchers demonstrated the … sequencing approaches including amplicon and metagenomic sequencing. For example, they showed that the … mobile genetic elements that were missed within paired metagenome assembled genomes (MAGs), and that dominant …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … year, the JGI team reported the first closed and finished genome derived from an uncultured bacterial single cell – a … of the tree of life. Used in tandem over the years, metagenomics and single cell genomics have afforded JGI users …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… researchers focused on the full composition of genes, or pangenome, of the model plant  Marchantia polymorpha. Commonly … 35 major evolutionary plant lineages in the  Open Green Genomes Initiative , a project supported by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… As part of the JGI’s 25th anniversary celebration, the 2022 Annual Meeting … from its beginnings in the sequencing for the Human Genome Project out to the future of the institution. Their … multiple DOE facilities with a single proposal. From the vantage point of JGI’s 25 years fueling discovery, Anderson …
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Tracing the Evolution of Shiitake Mushrooms
… New genomes highlight the diversity of white rot fungi in the … from around the world. By complete sequencing of 24 new mushroom genomes, and assembling genomes from 60 existing sequences, … supported by the NSF awards DEB- 1456588 to D.H. and DEB-1442113 to A.R., the Department of Energy award 0000238431 to …
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Nandita Nath
… Nandita is involved in developing new methods to improve genome recovery from single cells and to build sequencing …
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JGIota: Looking Back at Sequencing for Soybeans
… crop that could boost biofuels and fertilize fields. So in 2010, the JGI helped publish the original genome sequence for the soybean, Glycine max. With a full genome sequence, researchers have been able to look into …
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