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… interact with their environment. Prior to joining the Joint Genome Institute, his focus was primarily on how plants … temperature oscillations throughout the day. At the Joint Genome Institute, Dr. Cole’s research focus has been on …

… consequences of microbe-microbe interactions. Using metagenomes recovered directly from environmental samples and … in East Antarctica and enriched for native microbes. Metagenomes from enrichment cultures were sequenced and … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is …

…   Visualizing a novel, candidate viral genome found in the deep subsurface ecosystem. The Science … by combining a study of microbial communities (metagenomics) and a chemical labelling approach. The Impact … a targeted technique called virusFISH. Using fluorescently tagged probes, the team was able to visualize the behavior …

… Mini-Metagenomics Approach Helps Identify Novel Archaeal Methane … Biohub, and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user … Obsidian Pool hot spring. The researchers applied mini-metagenomics to these samples by sorting the microbes into …

… Northen’s research is focused on using metabolomics to link genomes with environments to understand how webs of microbes … Schadt, C., Martin, S., Carrell, A. et al. An integrated metagenomic, metabolomic and transcriptomic survey of Populus … Wang G et al. Chassis-Independent Recombinase-Assisted Genome Engineering Enables Rapid Activation of Biosynthetic …

… a long-term project to sequence, annotate and analyze the genomes of more than 300 Aspergillus Go here to learn more … the minimum amount of information for an uncultivated virus genome, including the source, methods of identification of the virus genome, and data quality. Go here to learn more about the …

… appointments at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … “The big surprise of the project was to realize that these genome copies that are spread throughout the whole cell are … more genes than most bacteria and hundreds of thousands of genome copies (polyploidy) that are spread throughout the …

… of how large-scale single cell genomics complements metagenomics studies. The Science Researchers demonstrated the … sequencing approaches including amplicon and metagenomic sequencing. For example, they showed that the … mobile genetic elements that were missed within paired metagenome assembled genomes (MAGs), and that dominant …

… year, the JGI team reported the first closed and finished genome derived from an uncultured bacterial single cell – a … oil plume from Deepwater Horizon oil spill led to a draft genome of the first deep-sea, oil-eating bacterium from a … of the tree of life. Used in tandem over the years, metagenomics and single cell genomics have afforded JGI users …

… researchers focused on the full composition of genes, or pangenome, of the model plant  Marchantia polymorpha. Commonly … 35 major evolutionary plant lineages in the  Open Green Genomes Initiative , a project supported by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …

… from its beginnings in the sequencing for the Human Genome Project out to the future of the institution. Their … multiple DOE facilities with a single proposal. From the vantage point of JGI’s 25 years fueling discovery, Anderson … from individuals whose projects were not accepted. As for feedback from those actually working with the JGI, Drell …

… New genomes highlight the diversity of white rot fungi in the … around the world. By complete sequencing of 24 new mushroom genomes, and assembling genomes from 60 existing sequences, this work expands the …