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Dan Rokhsar
… Dr. Rokhsar joined the JGI in 2000 as the founding Associate Director for Computational Genomics, and led the computational … and animals by combining computational genome analysis, sequence-based genetic methods, and comparative … AB in Physics, Princeton University, NJ MS in Theoretical Physics, Cornell …
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Phytozome: Tutorial Workshop from 2022 CROPS Conference @HudsonAlpha
… Phytozome workshop held during the June 2022 CROPS Conference … at the HudsonAlpha Institute for Biotechnology. Phytozome is the Plant Comparative Genomics portal of the Department of Energy …
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A Mentor’s Perspective on Training the Next Generation
… Over the years, hundreds of interns have come to the JGI from all parts of the globe to gain lab … they’ve all mentioned how invaluable their time at the JGI was and how great it was to have an experienced career …
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Danielle Goudeau
… Danielle operates the single-cell genomics pipeline for JGI collaborators. This work combines custom flow cytometric analysis, cell sorting, genome …
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SIPs with Standards
… Stable Isotope Probing (SIP) is a powerful technique for studying … catch: SIP labwork and analysis can be very demanding.  The JGI offers SIP analysis to make these experiments accessible … multiple teams and analyses. This episode, Rex Malmstrom (JGI), and Roli Wilhelm (Purdue University), share a few …
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Exploring Polymorphisms Created by Transposable Elements
… My project at the Joint Genome Institute (JGI) was to measure the polymorphisms that transposable elements (TEs) contributed to in the grass model species Brachypodium hybridum . …
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Back in the Lab: the 2023 Summer Intern Experience
… in several years for students and researchers alike at the JGI. With the past few years upended by the pandemic, 2023 gave interns the opportunity to be fully immersed in not only their work, but the opportunity to collaborate with and learn from fellow researchers onsite …
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The Mobilome in the Mire
… and new analysis methods are bringing this mobilome into light, and opening up new options for engineering these … Bagby (Case Western Reserve University) and Simon Roux (JGI) as they talk about their recent work on a time series from Sweden’s Stordalen Mire. …
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The Megadata of Lake Mendota - Part 2: Souped Up Computing
… This series is the story of a giant metagenome assembly from Wisconsin’s Lake Mendota. In … Perlmutter that works at large scale. But nearby the JGI, a cluster called Dori is also capable of running …
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MGM Workshop at Fisabio Summer School
… Genomics & Metagenomics Workshop The workshop is addressed to students and professionals of biology, biomedical research, the health sciences and related fields who are interested in learning … and the human microbiome. The workshop will train participants in state-of-the-art analytical methods in this area, by …
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MGM Workshop at Fisabio Summer School 2025
… Register here The workshop is addressed to students and professionals of biology, biomedical research, the health sciences and related fields who are interested in learning … and the human microbiome. The workshop will train participants in state-of-the-art analytical methods in this area, by …
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From Textbook to Real World Applications
… students Maya Hanck of Carondelet High School and Tim Kostolansky of De La Salle High School expressed an interest in … Evans and Jan-Fang Cheng in the Functional Genomics group took it upon themselves to mentor them. …
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