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Cell-free prototyping enables implementation of optimized reverse β-oxidation pathways in heterotrophic and autotrophic bacteria
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Physiological and genomic evidence of cysteine degradation and aerobic hydrogen sulfide production in freshwater bacteria
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Single-cell isotope tracing reveals functional guilds of bacteria associated with the diatom Phaeodactylum tricornutum
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Methane-fed microbial communities enriched from field-grown rice support diverse heterotrophic bacteria
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Ray Turner Completes Last Tour of Lab Duty at JGI
… as a typical monthly JGI All-Hands Meeting, after a couple of perfunctory items, the agenda went off the rails – according to plan but unbeknownst to Ray and most of the rest of the 200-plus Zoom participants. While the … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to …
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Silver age of GOLD introduces new features
… available, and enabling large-scale comparative genomics analysis initiatives. GOLD not only curates sequencing projects carried out at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … of: Studies, Biosample/Organisms, Sequencing Projects and Analysis Projects. Each of these entities are curated with a …
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A Pinch of Salt Activates Silent Gene Clusters in Streptomyces
… chemical factories. They hold genetic blueprints for dozens of complex compounds, but stay largely dormant under … bioproducts. This study offers a template — integrative analysis of multiple omics data from various environments — … The team also identified previously unknown promoter sequences within these gene clusters, offering new …
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Transcriptional responses of the marine green alga Micromonas pusilla and an infecting prasinovirus under different phosphate conditions
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An improved genome of the model marine alga Ostreococcus tauri unfolds by assessing Illumina de novo assemblies
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Phosphate limitation responses in marine green algae are linked to reprogramming of the tRNA epitranscriptome and codon usage bias
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SPRUCE-ing Up Science
… his backyard in Tennessee — the birds are chirping and a soft breeze ripples through the trees in his backyard. Originally from northern California and one of the first students to participate in the DOE Joint Genome … the inevitable questions about the study’s methods and analysis, Lawrence is spending time on the graphics that …
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JGI@25: Building a Better Bean
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … of the JGI; and Scott Jackson of the University of Georgia sequenced and analyzed the genome of the common bean. That … farmers and a commercial crop for large producers. The team sequenced and assembled a 473-million basepair genome of the …
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