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Expanding Virophage Diversity
… Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant … Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant … the air, plant rhizosphere, wastewater, and even animal and human (for the first time) gut and taxonomically …
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Benjamin Cole
… interact with their environment. Prior to joining the Joint Genome Institute, his focus was primarily on how plants interpret different light cues by … temperature oscillations throughout the day. At the Joint Genome Institute, Dr. Cole’s research focus has been on …
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Computationally Classifying Fungal Lifestyles
… Machine learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a proof of … that “taught” a computer how to classify 101 representative genomes of Dothideomycetes, the largest class of fungi, by … host specificity, particularly regarding the effects of climate change. Summary A team led by researchers at the U.S. …
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Streamlining Regulon Identification in Bacteria
… in Streptomyces coelicolor . The Impact As an integrative genome science user facility, connecting genes to functions … of the mission of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… crop. In 2018, the JGI had sequenced and assembled the genomes of two varieties of a close relative and model … information has allowed the research team to associate climate adaptations with switchgrass biology. Switchgrass has … is a valuable resource towards the effort to generate climate resilient switchgrass. Aside from climate-related …
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Progress Reports: 2002–2020
… pdfs of previous Progress Reports from the Joint Genome Institute.  …
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Genome sequences of key bacterial symbionts of entomopathogenic nematodes: Xenorhabdus cabanillasii DSM17905, Xenorhabdus ehlersii DSM16337, Xenorhabdus japonica DSM16522, Xenorhabdus koppenhoeferii DSM18168, and Xenorhabdus mauleonii DSM17908
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Trent Northen
… Northen’s research is focused on using metabolomics to link genomes with environments to understand how webs of microbes … Wang G et al. Chassis-Independent Recombinase-Assisted Genome Engineering Enables Rapid Activation of Biosynthetic … Selected Publications …
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JGI on the 2020 Highly Cited Researchers List
… a consortium that  released a very high quality reference genome sequence of green millet ( Setaria viridis ) in  … to the release of 52,515 publicly-available microbial draft genomes generated from environmental samples around the … and already available on the JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) platform. Nikos Kyrpides and  …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… data, a new JGI tool more accurately facilitates microbial genome discoveries. Unlocking the intricate details of … genomes are simpler to model than large plant or animal genomes, they are a good starting point to test the … the use of Byte-Pair Encoding (BPE) tokenization strategy. Imagine you’re at an arcade and need to convert your money …
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JGI Workshop at SIMB NP Meeting
… a given BGC in various hosts, availability of sequenced genomes, and computing resources needed to predict BGCs from available genome sequences. The DOE Joint Genome Institute (JGI), a DOE Office of Science User …
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Integrating Experimentation with Data
… $250     Industry: $700    Thanks for joining the Joint Genome Institute (JGI) and the Environmental Molecular … for omics-based and analytical characterization, imaging, and visualization, through a collaborative, …
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