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Draft genome sequences of Arthrobacter sp. AZCC_0090 and Mycobacterium sp. AZCC_0083 isolated from oligotrophic subsurface forest soil in the Santa Catalina mountains of Southern Arizona
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The JGI Data Portal: Improving User Experience
… “For thousands of scientists around the world, the JGI Genome Portal is a critical resource — it provides access to … more than 13 petabytes of data, accessible through the Genome Portal. “The task of making data more findable and … Google Analytics data, the team noticed that a large percentage of Phytozome users who were seeking to download all the …
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Charting Progress toward Professional Goals
… CalTeach initiative. During their time at the Joint Genome Institute, they interacted with interns from other …
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Ray Turner Completes Last Tour of Lab Duty at JGI
… 15 years, Ray Turner has been one constant for the Joint Genome Institute. On July 1, 2020, that all changed. Ray’s … 15 years, Ray Turner has been one constant for the Joint Genome Institute. On July 1, 2020, that all changed. Ray’s … at a high level as JGI transitioned from the Human Genome Project to gaining momentum as a national user …
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Training the Next Generation of Talent
… his summer research at the U.S. Department of Energy Joint Genome Institute (DOE JGI), a DOE Office of Science user … DOE JGI that provide hands-on experience in cutting-edge genome research and apply experimental and computation tools … to get the structure set up and collect the first round of feedback from the participants to learn how to improve in …
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Whole Genome Analyses Suggests that Burkholderia sensu lato Contains Two Additional Novel Genera (Mycetohabitans gen. nov., and Trinickia gen. nov.): Implications for the Evolution of Diazotrophy and Nodulation in the Burkholderiaceae
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Novel heavy metal resistance gene clusters are present in the genome of Cupriavidus neocaledonicus STM 6070, a new species of Mimosa pudica microsymbiont isolated from heavy-metal-rich mining site soil
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Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type strain (H1T), reclassification of Spirochaeta caldaria, Spirochaeta stenostrepta and Spirochaeta zuelzerae in the genus Treponema as Treponema caldaria comb. nov.,
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Mapping Heat Resistance in Yeasts
… A new approach for improving functional annotation in fungal genomes. The Science In a proof-of-concept study, … as the 1000 Fungal Genomics Project led by the DOE Joint Genome Institute (JGI), a DOE Office of Science User … improve our understanding of fungal diversity by sequencing genomes from across the fungal Tree of Life, but they also …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… to identify proteins, the team compiled DNA sequences (metagenomes) and messenger RNA sequences (transcriptomes) from … National Laboratory, to create the database. JGI provided metagenome and metatranscriptome sequences, as well as … (FICUS; #49499) program and used resources at the DOE Joint Genome Institute and the Environmental Molecular Sciences …
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JGI@25: Building a Better Bean
… of the University of Georgia sequenced and analyzed the genome of the common bean. That work was published online … The team sequenced and assembled a 473-million basepair genome of the common bean, identifying genes related to … across many different labs to be able to sequence a genome.” Since the paper was published in 2014, it has been …
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The More the Merrier: Making the Case for Plant Pan-genomes
… Brachypodium model system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” with respect to their genomes. In their base state, they are diploids with two … including agricultural staples and candidate bioenergy feedstock crops, are recent polyploids. Crop breeders have …
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