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… consequences of microbe-microbe interactions. Using metagenomes recovered directly from environmental samples and … in East Antarctica and enriched for native microbes. Metagenomes from enrichment cultures were sequenced and … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is …

…   Visualizing a novel, candidate viral genome found in the deep subsurface ecosystem. The Science … by combining a study of microbial communities (metagenomics) and a chemical labelling approach. The Impact … a targeted technique called virusFISH. Using fluorescently tagged probes, the team was able to visualize the behavior …

… Mini-Metagenomics Approach Helps Identify Novel Archaeal Methane … Biohub, and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user … Obsidian Pool hot spring. The researchers applied mini-metagenomics to these samples by sorting the microbes into …

… a long-term project to sequence, annotate and analyze the genomes of more than 300 Aspergillus Go here to learn more … the minimum amount of information for an uncultivated virus genome, including the source, methods of identification of the virus genome, and data quality. Go here to learn more about the …

… Northen’s research is focused on using metabolomics to link genomes with environments to understand how webs of microbes … Schadt, C., Martin, S., Carrell, A. et al. An integrated metagenomic, metabolomic and transcriptomic survey of Populus … Wang G et al. Chassis-Independent Recombinase-Assisted Genome Engineering Enables Rapid Activation of Biosynthetic …

… has partnered with researchers around the world to map out genomes of rumen microbes. In 2018, through a JGI Community … they called the Hungate1000, a catalog of 410 rumen microbe genomes. The project relied upon resources from laboratories … Sinead Leahy and the JGI’s Rekha Seshadri in this JGIota, a Genome Insider podcast minisode. To date it is the single …

… of how large-scale single cell genomics complements metagenomics studies. The Science Researchers demonstrated the … sequencing approaches including amplicon and metagenomic sequencing. For example, they showed that the … mobile genetic elements that were missed within paired metagenome assembled genomes (MAGs), and that dominant …

… year, the JGI team reported the first closed and finished genome derived from an uncultured bacterial single cell – a … oil plume from Deepwater Horizon oil spill led to a draft genome of the first deep-sea, oil-eating bacterium from a … of the tree of life. Used in tandem over the years, metagenomics and single cell genomics have afforded JGI users …

… researchers focused on the full composition of genes, or pangenome, of the model plant  Marchantia polymorpha. Commonly … 35 major evolutionary plant lineages in the  Open Green Genomes Initiative , a project supported by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …

… from its beginnings in the sequencing for the Human Genome Project out to the future of the institution. Their … very first project — the revolutionary work of the human genome project, which spanned nearly two decades, was filled … multiple DOE facilities with a single proposal. From the vantage point of JGI’s 25 years fueling discovery, Anderson …

… New genomes highlight the diversity of white rot fungi in the … around the world. By complete sequencing of 24 new mushroom genomes, and assembling genomes from 60 existing sequences, this work expands the …

… Nandita is involved in developing new methods to improve genome recovery from single cells and to build sequencing …