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Ancient Algae Reveal Secrets of Plant Evolution
… land over 600 million years ago. The Science By studying the genes of land plants’ closest algal relative,  … Program of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … of Nebraska Lincoln, the Research & Artistry Award of Northern Illinois University, the Joint Genome Institute …
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Understanding Wildfire Recovery, Starting in Soil
… a wildfire. The Science After a wildfire burns, recovery begins at the forest floor. Within the soil, a microbiome of … to health, researchers have taken a look at microbial genomes across a spectrum of burned soils. By connecting … DOE Office of Science User Facilities located at Pacific Northwest National Laboratory and Lawrence Berkeley National …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
Team develops a computational pipeline to sift and characterize RNA virus sequences.  A zoo … Information, and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … RNA Polymerase (RdRP), necessary for replicating the RNA genome replication, detecting it has been a challenge. …
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Cataloging the Microbes that Manage the Health of River Systems
Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent … Nature paper , researchers describe a dataset of microbial genomes sampled from rivers covering 90% of the watersheds … a community science river sampling program at Pacific Northwest National Laboratory. The JGI sequenced over 1,000 …
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Busting the Unbreakable Lignin
… of plant components   The Science There are three main ingredients to tackle when it comes to breaking down a … with researchers at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at … RNA sequencing and alignment to the reference fungal  genome . The study’s pivotal NMR (nuclear magnetic …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… the sex chromosomes of mammals is, for the first time, seen in a plant. The Science Sex in plants can be befuddling. … Laboratory and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … complete sex chromosomes. The results were published in  Genome Biology . The team found that the shrub willow’s W …
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JGI-UC Merced Interns Share Their 2021 Experiences
During the summer of 2021, 13 interns from UC Merced spent … Evaluation of Binning Tools for Microbial Eukaryotes in Metagenomes … Functional exploration of Phage Impact on … Lineage Specific Conserved Genes in Giant Viruses … Pan-genome Graphs: Approaches for Complete Categorization of …
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Gut Fungi: Unexpected Source of Novel Chemicals
Fungi from herbivore poop make surprisingly complex compounds — an energetically expensive feat … called natural products . Yet, combing through the genomes of four anaerobic fungal species has revealed, for … (EMSL), a DOE Office of Science user facility at Pacific Northwest National Laboratory. The team’s research at both …
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How Filamentous Fungi Sense Food
Tracing gene regulatory networks in the model fungus  Neurospora … researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … enriching the work being done as part of the 1000 Fungal Genomes Project. Funding for the project was also provided …
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Streamlining Regulon Identification in Bacteria
RIViT-seq technology could speed up associating transcription factors with their target genes. The … in Streptomyces coelicolor . The Impact As an integrative genome science user facility, connecting genes to functions … of the mission of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Training the Next Generation of Talent
New Graduate Internship Program Builds Bridges Between DOE JGI, UC Merced … his summer research at the U.S. Department of Energy Joint Genome Institute (DOE JGI), a DOE Office of Science user … DOE JGI that provide hands-on experience in cutting-edge genome research and apply experimental and computation tools …
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JGI on the 2021 Highly Cited Researchers List
… among those recognized by Clarivate Analytics for demonstrating “significant influence in their chosen field or fields … team that combined field data with a reference switchgrass genome to associate climate adaptations with switchgrass … of webinars featuring aspects of the Integrated Microbial Genomes & Microbiomes (IMG/M) Nikos Kyrpides was part of an …
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