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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… Grigoriev from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … habitats. The work is part of the JGI’s 1000 Fungal Genomes Project, which aims to provide genomic information … Agri-Food Canada at Summerland BC aimed to generate whole genome data of Olpidium. This required an enormous amount of …
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A Step Toward Controlling Soybean Rust
… yields by as much as 90 percent. As part of the DOE Joint Genome Institute’s  2016 Community Science Program portfolio … Research (INRA)  proposed sequencing a reference genome for  P. pachyrhizi to develop better strategies to … rust disease. Soybean itself is a  JGI Flagship plant genome , and JGI  published its genome sequence in 2010.     …
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DOE Metrics
… developments for improving microbial, metagenomic, or plant genome assemblies. [Download PDF] Q2 – Report on progress … the interpretation of microbial, metagenomic, or plant genomes. [Download PDF] End-of-year Goal – Develop one new …
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… genes has helped pave the way for the conception of a pangenome. Recordings and recaps of all three keynote talks … Talk Title: CRISPRology — The Science and Applications of  Genome Editing (Virtual) Jennifer Doudna is a professor at … . Susan Wessler , UC Riverside Shaping up conservative genomes Keynote Talk Title: Transposable Element-Mediated …
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Defining a Pan-Genome for Antarctic Archaea
… Analysis of haloarchaeal metagenomes broadens understanding of Antarctic biogeography. … variation in haloarchaea, they also characterized metagenomes (collections of partial genomes) from six hypersaline Antarctic lakes. The Impact By … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is …
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Adopt-A-Genome
… In this episode, undergraduates adopt genomes that the JGI sequenced, but never published in the literature. These students analyze the genomes, write reports, and publish first-author papers, … Escobar (California State San Marcos) about how the Adopt-A-Genome project got started. Plus, Kalyani Maitra (California …
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PhycoCosm Tutorial
… the largest interactive collection of sequenced algal genomes, omics data and comparative analysis tools developed by the Joint Genome Institute (JGI), a US Department of Energy Office of …
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Refining the Process of Identifying Algae Biotechnology Candidates
… multiple institutions have sequenced and analyzed the genome of an alga that thrives in saltwater (halotolerant) … researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Labs to screen, characterize, sequence and then analyze the genomes and multi-omics datasets for algae that can be used …
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Waiting to Respire
… Genomes from uncultivated bacteria offers clues to ancestral … teams joined forces and data sets to describe bacterial genomes for related (“sibling”) lineages Margulisbacteria … Paula Matheus Carnevali was working with a group of metagenome-assembled genomes (MAGs) dubbed Margulisbacteria, and …
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Fishing for Novel Cellulose Degraders
… by Tanja Woyke at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … to sort cells into several small pools, followed by whole genome amplification and shotgun sequencing. The team first … To validate the predicted cellulases from their captured genomes, the team then used DNA synthesis and cloning, …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… break down PCE into the chemical compound ethene. Applying genome sequencing and analysis, the researchers identified … were sequenced by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … data. (Data from the project are available on the  JGI Genome Portal .) The team has also been able to discover …
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