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JGI@25: Fueling Investigation into Methane-Making Microbes
… as well as efficient engineering of biofuels. Since 2010, the JGI has partnered with researchers around the world to map out genomes of rumen microbes. In 2018, through a JGI Community Science Program proposal that … researchers put together what they called the Hungate1000, a catalog of 410 rumen microbe genomes. The project …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… to terrestrial habitats. The work is part of the JGI’s 1000 Fungal Genomes Project, which aims to provide genomic … at the time. Following the publication of their paper in 2011, Dr. Sekimoto from University of British Columbia and Dr. … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Triggering Morel Fruiting
… from an external source.  The work is part of the JGI’s 1000 Fungal Genomes Project, which aims to provide genomic … fruiting bodies of morel in walk-in growth chambers in 1980s. Unfortunately, he died suddenly, and his patent has … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… resulted from a three-way collaboration that began in 2019, recalled Uri Neri of Tel Aviv University, one of the … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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JGI@25: The Little Alga That Could
… specific algae. The reference genome is cited in roughly 10% of all since-released publications on green algae. “The …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… in this publication during her summer internship in 2018. She selected one of the projects posted by JGI fungal … four-day data carpentry workshop for the incoming 2021 JGI-UC Merced interns to help familiarize incoming … Evolution . Mol Biol Evol. 2022 Feb 3;39(2):msab372.doi: 10.1093/molbev/msab372.   Byline: Ashleigh Papp …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… version of a specific chemical, where ordinary Carbon-12 atoms are swapped for the heavier, non-radioactive … this was the first workshop of its kind on SIP metagenomics,” Malmstrom said.  Increasingly, efforts like these … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Daniel Udwary
Hopkins University (2000) BS in Chemistry, SUNY Albany (1996) … List available on Google Scholar … Education … Publications …
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Hiroshi Otani
Since joining the DOE Joint Genome Institute in 2016, Dr. Otani has been studying secondary metabolism in … RiPP biosyntheses. J Ind Microbiol Biotechnol. 2023 Feb 17;50(1):kuad005.  Otani H, Udwary DW, Mouncey NJ. … griseus. Mol. Microbiol. 87, 1223-1236. PubMed … Education … Publications …
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Computationally Classifying Fungal Lifestyles
… an algorithm that “taught” a computer how to classify 101 representative genomes of Dothideomycetes, the largest … “learned” to identify data generated in part through the 1000 Fungal Genomes Project, including 55 newly-sequenced …
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Eelgrass Proves to Be Much Younger Than We Thought
… the southern California and Mexican coastlines. Roughly 100,000 years later, that Japanese eelgrass crossed the … from the China Scholarship Council to L.Y. (number 201704910807), by a fellowship to M.K. in the Helmholtz School … Program (CSP 502951, 2016, Population and evolutionary genomics of host–microbiome interactions in Zostera marina …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… are.” But according to a new study published September 16, 2021 in Nature Communications , warmer waters and communities … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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