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Secreted Effector Proteins of the Poplar Leaf Spot and Stem Canker Pathogen Sphaerulina musiva Manipulate Plant Immunity and Contribute to Virulence in Diverse Ways.
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JGI Workshop at SIMB NP Meeting
… expressing a given BGC in various hosts, availability of sequenced genomes, and computing resources needed to predict BGCs from available genome sequences. The DOE Joint Genome Institute (JGI), a DOE …
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Genome sequences of key bacterial symbionts of entomopathogenic nematodes: Xenorhabdus cabanillasii DSM17905, Xenorhabdus ehlersii DSM16337, Xenorhabdus japonica DSM16522, Xenorhabdus koppenhoeferii DSM18168, and Xenorhabdus mauleonii DSM17908
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JGI Hosts GPU Hackathon in May
… and the code owners will be able to get assistance from mentors and a team to port their code to a new … From our partners …
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Rex Malmstrom
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Crysten Blaby-Haas
… She earned her PhD in Microbiology and Cell Science in 2011 from the University of Florida, working with Valérie de … biology and reverse genetics to test those hypotheses. From 2011 – 2015, she worked with Sabeeha Merchant at UCLA … (2017) Insights into the red algae and eukaryotic evolution from the genome of Porphyra umbilicalis (Bangiophyceae, …
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Ray Turner Completes Last Tour of Lab Duty at JGI
… a close as this previously retired Naval Commander retires from Berkeley Lab. For the last 15 years, Ray Turner has … a close as this previously retired Naval Commander retires from Berkeley Lab. On June 24, in what was billed as a … a mask for Ray to wear and a red carnation lei flown in from Maui, care of the Admin Group’s Terri Bartolome. What …
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Ancient Algae Reveal Secrets of Plant Evolution
… enhanced our understanding of how early plants transitioned from water to land. Key gene groups involved in stress … Berkeley National Laboratory (Berkeley Lab), scientists sequenced the genomes of four  Zygnematophyceae algae, which … plant resilience and productivity. The algal genomes sequences are available on the JGI’s  PhycoCosm portal. …
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Team Science Reveals Important Protein in Poplar
… and cell wall structure in the poplar plants with help from scientists at the NSLS-II.  These findings lay the … From our partners …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… with excitement and determination as they came onsite. From data carpentry to science communications, their … this short video (below) to hear more about the summer from their own perspectives. The interns from this cohort … mentor Bryce Foster, Benchmarking Bioinformatics Tools for Sequence Similarity Searching Morgan Lavenstein Bendall and …
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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
… laboratory ecosystems to help transition microbiome science from largely observational to reproducible mechanistic …
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The JGI Data Portal: Improving User Experience
… JGI Data Portal , a pilot download experience accessible from JGI’s plant portal Phytozome . Although the Data Portal … are more broadly applicable to the download processes from the other JGI Portals, as well. “For thousands of … experience and beginning work on the download experience from MycoCosm and PhycoCosm, with the intent of eventually …
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