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Supporting Global Research into Actinomycetes
… ActinoBase offers a public portal of insight into special groups of actinobacteria Streptomyces is more than just a funny … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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Genome sequences of key bacterial symbionts of entomopathogenic nematodes: Xenorhabdus cabanillasii DSM17905, Xenorhabdus ehlersii DSM16337, Xenorhabdus japonica DSM16522, Xenorhabdus koppenhoeferii DSM18168, and Xenorhabdus mauleonii DSM17908
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Computationally Classifying Fungal Lifestyles
… genomes to classify gene families. The Science As a proof of concept, researchers developed an algorithm that “taught” … class  Dothideomycetes includes fungi that obtain nutrients from decaying organic matter (saprobes), and many plant … supported by the NSF grants  DEB-1354625 and  IOS-1456958 . Sequencing of  Dothideomycetes genomes were conducted as …
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Triggering Morel Fruiting
… A collaborative team led by Hao Tan from the Sichuan Academy of Agricultural Sciences in China … in France and Igor Grigoriev from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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Genome evolution in the allotetraploid frog Xenopus laevis
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The Genome of the Western Clawed Frog Xenopus tropicalis
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JGI Accepts 17 Proposals for Community Science Program
… Interactions Within Ecosystems Latest portfolio of approved proposals highlight biodiversity and how … (Berkeley Lab). They were selected through peer review from 41 full proposals out of 50 letters of intent … State University and colleagues aim to understand how soil microbiomes in fire-adapted ecosystems respond to low and …
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Corymbia Genome Expands Terpene Synthesis Knowledge
… Genome annotations of two C. citriodora subspecies broaden understanding of the … synthase gene family across eucalypt lineages. The Science From the distinct smell of eucalyptus to the flavor of wine, … DOE’s Joint BioEnergy Institute (JBEI), the JGI worked on resequencing several eucalypt genomes to establish the …
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Novel bacterial clade reveals origin of form I Rubisco
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A One-Stop Shop for Analyzing Algal Genomes
… data portal allows anyone to freely investigate the genes of more than 100 algae. The Science Interested in the … and what they do. Summary The name PhycoCosm stems from the Greek phykos, meaning seaweed. Seaweeds are algae, … researchers, including the Integrated Microbial Genomes and Microbiomes (IMG/M) system for microbial and metagenome …
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Ray Turner Completes Last Tour of Lab Duty at JGI
… a close as this previously retired Naval Commander retires from Berkeley Lab. For the last 15 years, Ray Turner has … as a typical monthly JGI All-Hands Meeting, after a couple of perfunctory items, the agenda went off the rails – according to plan but unbeknownst to Ray and …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… Antarctic algae need their vitamins; zinc fuels some of their most important functions. Even in the chilly waters of Antarctica, tiny ocean-dwellers called phytoplankton play … on microalgal communities across different ocean latitudes from pole to pole, using metatranscriptome and metagenome …
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