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JGI Workshops at PAG
… breadth of algal diversity, the numbers of sequenced algal genomes, and the quality of those genomes, is rising. The purpose of this Workshop is to …
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Understanding Wildfire Recovery, Starting in Soil
… to health, researchers have taken a look at microbial genomes across a spectrum of burned soils. By connecting … they reconstructed and examined over six hundred bacterial genomes — mainly actinobacteria, as well as proteobacteria, … interact; beyond bacteria, these samples harbored fungal genomes, including a novel Leotiomycetes species and …
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Nigel Mouncey
… Encyclopedia of Actinobacteria with 824 Isolate Reference Genomes. Cell Genomics 2: 100213 Nayfach S et al. 2021. A …
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Publication Policy
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Tanja Woyke
… 35, 725-731. Mukherjee et al. 2017. 1,003 reference genomes of bacterial and archaeal isolates expand coverage …
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DAP-seq Drives Robust Mapping of Gene Regulation
… to technical limitations and the sheer complexity of plant genomes. Now, with improvements to DNA Affinity Purification … adapted the method to handle the complexity of large plant genomes. In addition: Multiplexed barcoding enables the … thousands of regulatory “switches” within multiple complex genomes. The end product is an expansive, multi-species …
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Biotech Partners Summer Intern Co-Authors NAR Paper
… the version 6 data updates and feature enhancements to the Genomes OnLine Database (GOLD) administered by the DOE JGI. … his student’s contributions as reviewing close to 3,800 metagenomes to verify geographic locations and assign latitude …
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Ian Blaby
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Gut Fungi: Unexpected Source of Novel Chemicals
… called natural products . Yet, combing through the genomes of four anaerobic fungal species has revealed, for … and Piromyces finnis . In work reported in 2017, the fungal genomes were sequenced by the U.S. Department of Energy … plant material in herbivore guts. A deeper dive into the genomes and follow-up experiments, recently reported in the …
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Cultivating Symbiotic Antarctic Microbes
… consequences of microbe-microbe interactions. Using metagenomes recovered directly from environmental samples and … in East Antarctica and enriched for native microbes. Metagenomes from enrichment cultures were sequenced and … From these assemblies, complete or near-complete population genomes were recovered—termed “metagenome-assembled genomes” …
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Mapping Heat Resistance in Yeasts
… A new approach for improving functional annotation in fungal genomes. The Science In a proof-of-concept study, … improve our understanding of fungal diversity by sequencing genomes from across the fungal Tree of Life, but they also …
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Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
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