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You Can Move, But You Can’t Hide
… develop a tool to quickly and accurately identify mobile genetic elements like plasmids and viruses. The Science … forms of MGEs are viruses and plasmids. They can be found in virtually all of Earth’s ecosystems. A software tool  … MGEs based upon their gene content and their genetic sequences. The software was created by researchers under the …
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JGI Announces FY26 Large Scale Portfolio for Our Community Science Program
… Maureen Coleman and Hugh Cross; [Below] Zac Freedman, Martin Jonikas, Lotus Lofgren, Fumito Maruyama, Lauren Stadler, … organisms and ecosystems. Scientists are engineering next-generation feedstocks through CRISPR-edited poplars with … the research consortium aims to generate over a terabase of sequence. “We are thrilled to support this year’s CSP …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… In honor of the JGI's 25th anniversary in 2022, we have … and a specific microbial host to replicate. Sequencing genetic material directly from samples sidesteps these … over 125,000 partial and complete viral genomes. That study multiplied the number of known viral genes by a factor …
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The JGI Data Portal: Improving User Experience
… human-centered, agile collaboration between the JGI and the information technology company Truss has resulted in the JGI Data Portal , a pilot download experience … databases and tools,” noted  Kjiersten Fagnan , JGI’s Chief Informatics Officer. JGI’s Portals, including Phytozome , …
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JGI Workshops at 33rd Fungal Genetics Conference
… the Edge of Pathogenicity" Workshop Steven Ahrendt presenting  Friday, March 20: JGI-EMSL Workshop: "Toward 10,000 …
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Cell by cell: population genetics in the wild
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Identification of mobile genetic elements with geNomad
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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… Multiple 2021 HPCwire Awards ” on the Berkeley Lab Computing Sciences site. Lawrence Berkeley National Laboratory … Lab), the National Energy Research Scientific Computing Center (NERSC), the DOE Joint Genome Institute (JGI), and the Energy Sciences Network … genomics in support of DOE missions related to clean energy generation and environmental characterization and cleanup. …
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2022 Progress Report
… Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
… DNA Synthesis Science group held a  JGI Engagement: Accessing Functional Genomics Capabilities Webinar inviting … the data had driven his lab’s focus on guide RNA library generation and development and its applications. “I moved to … the researchers will receive a FedEx package with the sequenced, quality controlled population representing the …
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FICUS Overview
… The Facilities Integrating Collaborations for User Science (FICUS) initiative was established in 2014 to encourage and enable … review by JGI staff as well as staff at the other participating facilities, who consider technical feasibility and readiness to begin work.  During scientific peer review, …
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JGI-TMF Critical Minerals and Materials Call
… The joint Critical Minerals and Materials call represents a unique opportunity … to request the capabilities and expertise of both the Joint Genome Institute and the Molecular Foundry in one research … review by JGI staff as well as staff at the other participating facilities, who consider technical feasibility and …
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