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A User-Centered Approach to Accessing JGI Data
… When the JGI Data Portal (https://data.jgi.doe.gov/) launched last year, it was only accessible … sets through a common set of metadata. For Steve Wilson, JGI’s Systems Engineering group lead, the Data Portal … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… Accepted proposals emphasize JGI interests in algae and secondary metabolites. A total of … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … algal viruses.  The approved proposals started October 1, 2020 and the full list is  available here . They are expected …
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Nikos Kyrpides
… Pavlopoulos GA et al. (2023) Unraveling the functional dark matter through global metagenomics. Nature . 622(7983):594-602. Camargo AP. et al. (2023) Identification of mobile … Nayfach S, et al. (2021) Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome. Nat Microbiol . …
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JGI Welcomes New UEC Members
… The JGI User Executive Committee (UEC) represents the JGI user community and is responsible for providing input … who represent the scientific areas of plant genomics, DNA synthesis and metabolomics, respectively. To view the …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number … crop productivity across 1,100 miles and eight states. In 2021, using switchgrass samples from these gardens, a team …
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ActinoBase: tools and protocols for researchers working on Streptomyces and other filamentous actinobacteria
Learn more
Events
…  Learn about meetings the JGI is hosting:   … The JGI is represented at conferences year round; find out where …
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Year in Review: JGI’s 2018 Progress Report Available Now
… The latest edition of the JGI Progress Report highlights notable research and … lake east of California’s Yosemite National Park, taken by JGI’s own Jon Bertsch. Microbes isolated from Mono Lake were sequenced by the JGI (isolates here , here and here ), and the data has been …
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Three Join the JGI User Executive Committee
… The JGI User Executive Committee (UEC) recently welcomed three … in metagenomics and novel applications for long-read DNA sequencing. As a UEC member, Wilbanks will advocate for … Greenham stepped down at the end of her term. In late 2023, the JGI launched a solicitation for nominations for …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, 24 large-scale … investigator on any proposals previously accepted through JGI’s calls. Nearly 200 Terabases of data are expected to be … generated for the accepted proposals, said Susannah Tringe, JGI User Programs Deputy. “These new CSP projects accelerate …
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Dispatches From JGI Interns
… Every summer, the flagship JGI-UC Merced Internship Program invites undergraduate and … to engage in real, impactful research projects with JGI mentors. In this episode, hear two interns from the 2021 cohort describe their deep dives into genomics, …
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JGI Earth Month: Kjiersten Fagnan Reflects on Shelter-in-Place Effects
… In   April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25.  On March 17, 2020, a shelter-in-place … took effect in six San Francisco Bay Area counties. The JGI, located at Lawrence Berkeley National Laboratory, is … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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