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A remarkable expansion of oligopeptide transporter genes in rust fungi (Pucciniales) suggests a specialization in nutrients acquisition for obligate biotrophy.
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The Sequences of 1504 Mutants in the Model Rice Variety Kitaake Facilitate Rapid Functional Genomic Studies
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Waiting to Respire
… acquired the ability to produce their own food and generate oxygen as a byproduct. The abundance of oxygen … development of multicellular organisms. Not all bacterial lineages harnessed aerobic respiration when the Cyanobacteria … The research teams opted to collaborate on a single study, with Matheus Carnevali and Schulz sharing co-first …
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A sorghum genome-wide association study (GWAS) identifies a WRKY transcription factor as a candidate gene underlying sugarcane aphid (Melanaphis sacchari) resistance
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Kjiersten Fagnan
Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing … JGI workloads to run on supercomputing hardware and worked closely with staff to understand the data-intensive nature … Opioid Epidemic: Determining the Epistatic and Pleiotropic Genetic Architectures for Chronic Pain and Opioid …
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A Collaboration to Improve Plant Genome Annotations Across Species
… led a team that  recently published work on the JGI Plant Gene Atlas in  Nucleic Acids Research . The project spans 15 … Communication Manager Sarah Sharman recently interviewed study first author Avinash Sreedasyam, a HudsonAlpha senior … Schmutz is the Plant Program Lead at the JGI. Sarah:  Why is a resource like this important to the field of plant …
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Sequencing wild and cultivated cassava and related species reveals extensive interspecific hybridization and genetic diversity
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Picking Up Threads of Cotton Genomics
Berkeley National Laboratory (Berkeley Lab) has now sequenced and assembled the genomes of these five cotton … authors of the  paper published April 20, 2020 in  Nature Genetics include Jane Grimwood and Jeremy Schmutz of JGI’s  … insights on crop improvements at a genetic level, including why having multiple copies of their genomes (polyploidy) is …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
Every year, the JGI sequences around 35,000 samples — from plants, algae, bacteria, archaea, fungi, viruses — to support scientists around the world. Most of those researchers send their samples in from afar, without ever hearing much about the sequencing …
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Sequencing of Multiple Clostridial Genomes Related to Biomass Conversion and Biofuel Production ▿
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Genomics of wood-degrading fungi
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Metabolic Modeling of Fungi
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