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… JGI’s  PhycoCosm data portal , an interactive collection of sequenced algal genomes, omics data and comparative analysis tools. Questions and Answers 1.  Q(uestion): Why would your Tree ever differ from NCBI Taxonomy? … getting these data on our system. If it’s not based on the gene model, that should be ok generally. We can work with …

… of its kind ever assembled. The team identified 15 core genes shared across all fungi, and found that some of these … time. They also discovered more than 6,000 mitochondrial sequences previously unrecognized within existing public … Impact This dataset gives researchers a new foundation for studying how fungi produce and manage energy at the cellular …

… a quest to better understand the factors and mechanics of gene expression in over 400 fungi species. “Fungi are the … the most efficient at making proteins likely factors into why fungi have been so evolutionary and ecologically … applications, Wint also developed and tested a gene sequence-based predictor of gene expression levels using …

… soil health. Summary Soil viruses are a reservoir of genetic diversity and capable of transferring genes from one … AMGs in soil viruses thought to break down chitin, the gene sequences were cloned by the JGI.  The JGI’s DNA synthesis … and AMGs. It could spawn future research into understanding why these AMGs exist in the first place, and what function …

… project to form new connections between fungal guilds, genes and function. If a tree falls in the forest — whether … at Lawrence Berkeley National Laboratory (Berkeley Lab) sequenced 1 trillion bases — a terabase — of soil RNA for … Remarkable Similarity Despite Vast Diversity For this study, researchers collected soil samples from four sites: …

… and a unique chronic infection cycle. “We’re not sure why we systematically manage to miss them; maybe it’s due to … first worked on a reference dataset that included genome sequences known to be affiliated with the Inoviridae. “What … and his colleagues found that the inoviruses were being targeted by their hosts’ own CRISPR-Cas systems, termed …

… impressive environmental and energy advantages explain why soybean is a flagship genome of the JGI’s Plant Program. … first legume species with a published complete draft genome sequence. At the time, the vital global source of both … of Missouri said he and his colleagues had identified 1,110 genes involved in lipid metabolism.  “There’s still a lot of …

… with JGI scientists on an ambitious project: to bring in robots to help process experiments that measure microbial activity in soil. Now, the researchers and robots have made these …