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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
… applied to samples collected from acidic iron-oxide microbial mats in Yellowstone National Park over time, … thousands to millions of copies of a particular DNA sequence from just a few pieces of DNA. Summary The extreme … (gene expression), and direct microscopy. Through the JGI’s Community Science Program , the team used metagenome …
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JGI Advisory Committees Code of Conduct
… Guiding Principles All staff members of the US Department of Energy (DOE) Joint … the trust of our stakeholders. These stakeholders range from scientists to members of the public whose tax dollars … committees serve as ambassadors and role models for the community, demonstrating the highest standards of ethical …
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Better Crops With a Pointillist Approach to Plant Genomics
… In this episode, we peer into plant cells. Researchers are using measurements from single cells to understand which genes help plants …
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Tanja Woyke
… in 2004. The main object of her research was the symbiont community of a gutless oligochaete for which she deciphered … a Research Scientist position in 2007, she switched gears from metagenomics to single-cell genomics, which is now her … primary interest and passion. Dr. Woyke stepped into the Microbial Genomics Program Lead position in 2009 and assumed …
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Mapping the Earth’s Hidden Fungal Kingdom
… years, fungi have spread quietly throughout our planet. From the deepest ocean floors to Antarctic valleys, these … about 200,000 fungal species have been named. Among those sequenced, roughly half of all genes have completely unknown … is both logistical and analytical. How can the research community systematically sample an ancient, hyperdiverse …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring … metatranscriptome datasets from the JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) system. “We then … to defend against RNA,” Roux noted, “although it’s unclear why this is so rarely detected.” Developing Approaches for …
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Swift microbiome‐mediated phenotype transfer from transgenic plants
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Impacts of Maize Domestication and Breeding on Rhizosphere Microbial Community Recruitment from a Nutrient Depleted Agricultural Soil
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DOE Metrics
… = 91 days; Actual Operation = 24 days due to significant sequencer downtime related to the shelter-in-place. ††† … Q1 – Report on new computational developments for improving microbial, metagenomic, or plant genome assemblies. … Hours reflect a delay in implementation of the LIMS from Q2 to Q3. As a result of the delay in the LIMS …
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Intraspecific comparison and annotation of two complete mitochondrial genome sequences from the plant pathogenic fungus Mycosphaerella graminicola
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Complete Genome Sequence of Lactobacillus buchneri NRRL B-30929, a Novel Strain from a Commercial Ethanol Plant
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High-resolution phylogenetic microbial community profiling
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