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Learning to Look
Machine learning approach significantly expands inovirus … and a unique chronic infection cycle. “We’re not sure why we systematically manage to miss them; maybe it’s due to … first worked on a reference dataset that included genome sequences known to be affiliated with the Inoviridae. “What …
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Targeted single‐cell sequencing
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Introduction: Sequences and consequences
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A Natural Mechanism Can Turbocharge Viral Evolution
Understanding how a fundamental mechanism of evolution allows … to adapt to changing environments. It also sheds light on why the rapid injection of mutations in a particular gene … all at once from the same environment, called metagenomes. Why? Simon Roux, who led the research team and is the head …
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what … kinds of ecosystems. However, matching these viral genetic sequences to their hosts is crucial to understanding what … processes like  carbon fixation , nitrogen cycling and methane production. Meanwhile, environmental viruses are …
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The trajectory of microbial single-cell sequencing
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ClaMS: A Classifier for Metagenomic Sequences
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Sequencing the fungal tree of life
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Genome sequence of the palaeopolyploid soybean
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
Large-scale comparative analysis leads to identification of … Group. Many of these bacterial and archaeal genome sequences have been generated using techniques that the JGI … Over the years more than 3,400 genomes have been sequenced from curated DSMZ isolates, for which quality DNA …
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JGI@25: Roots of a Mutualist Relationship
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … and environmental challenges. In March 2008, the genome sequence of the forest fungus Laccaria bicolor was published … a JGI Flagship Genome and the first tree to have its genome sequenced. Having this first genome sequence of a …
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Jane Grimwood Named HudsonAlpha Genomics Chair
Congratulations to Jane Grimwood, who has been appointed the … A 2021 Nature paper announcing a high-quality reference sequence of the complex switchgrass genome , using samples … paper on the release of the high quality reference genome sequence of green millet ( Setaria viridis ). The team of …
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