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How Filamentous Fungi Sense Food
… the order in which this fungus breaks down plant cell wall materials including lignin, cellulose and hemicellulose. The … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … proposal akin to the Encyclopedia of DNA Elements (ENCODE) project, which is aimed at determining the activity, …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… by combining a study of microbial communities (metagenomics) and a chemical labelling approach. The Impact … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … (Nachwuchs-gruppe “Dr. Alexander Probst”), and the NOVAC project of the German Science Foundation (grant number DFG …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … viruses,” said Simon Roux , a JGI scientist and one of the project co-leads. “But same as DNA viruses, RNA viruses … Finding the RNA virus snowflakes in the snowstorm of genomic data involved developing special computational …
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Marine Microbe Contains Multitudes
A deep dive into microbial genomics reveals one bacterial species is made of four … Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … out that, without the JGI, the discoveries made in this project wouldn’t have been possible. Scientists hadn’t known …
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JGI Earth Month: Wetlands Work in #TenHundredWords
… graduate student working with  Susannah Tringe , JGI’s User Programs deputy and head of the Microbial Systems group … Graduate Student Research (SCGSR) program . Her research project, “Microbial Community Structure and Methane …
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Micro-Scale Applications Group
… the first quantitative Stable Isotope Probing (SIP) Metagenomics pipeline that utilizes internal analytical … is eating what?” and “who is active? … The JGI provides users access to cutting-edge cell sorting, DNA amplification, and sequence analysis to recover the …
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The Earth BioGenome Project 2020: Starting the clock
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Making a Lichen Together
… in the lichen lifestyle. The team’s results appear in  BMC Genomics . To explore the genomes, Armaleo and colleagues … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility. Grigoriev and his team at the JGI contributed … from the Duke Institute of Genomic Sciences and Policy (for DNA sequencing and assembly); by a three-year subcontract to …
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Genomic sequencing of single microbial cells from environmental samples
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The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata
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The Genomes On Line Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata
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Chapter Five The Sphagnum Genome Project A New Model for Ecological and Evolutionary Genomics
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