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The core metabolome and root exudation dynamics of three phylogenetically distinct plant species
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JGI Portals
… tools for comparative genomics of fungi. Mycocosm enables users to navigate across sequenced fungal genomes, and to … generated by the JGI and by others. The web portal allows users to navigate these genomes and conduct comparative and … data from many common software tools, and from many users. It is also a place where the community can upload new …
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Mapping the Earth’s Hidden Fungal Kingdom
… Institute (JGI)’s Fungal and Algal Science Program and JGI users have been at the forefront of tackling this enormous … co-author of the paper. The JGI is a DOE Office of Science User Facility located at Lawrence Berkeley National … signatures. The scale and quality of JGI data makes our user facility well-positioned to provide the comprehensive, …
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Open access repository-scale propagated nearest neighbor suspect spectral library for untargeted metabolomics
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Natural Prodcast Episode 23: Aaron Puri
… like E. coli , and then being able to look using the metabolomics capabilities also at JGI — it’s really cool … and send that to back to JGI and have them do untargeted metabolomics, which we can then using some tricks to try to … what I’m joking about having a lot of data. It’s a lot of metabolomics data sets. So what have we learned? So one …
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An Integrated Dataset to Understand Ecosystem Interaction
… microbes living around the tree roots in the rhizosphere. Metabolomics allowed them to then examine the chemicals and … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by the Office of Science of the …
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Metabolomic Patterns of Septoria Canker Resistant and Susceptible Populus trichocarpa Genotypes 24 Hours Postinoculation.
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Soil metabolome response to whole-ecosystem warming at the Spruce and Peatland Responses under Changing Environments experiment
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Comparative transcriptomics and metabolomics reveal specialized metabolite drought stress responses in switchgrass (Panicum virgatum)
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Information theory and machine learning illuminate large‐scale metabolomic responses of Brachypodium distachyon to environmental change
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Plant Microbial Interactions Group
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Ben Bowen
… supporting the DOE’s Biological and Environmental Research user community in their bioenergy and environmental … Ruebel, O., Northen, T., & Bowen, B. (2015). Analysis of metabolomics datasets with high-performance computing and … algorithm for metabolite identification in metabolomics. Analytical chemistry, 86(19), 9496–9503. …
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